CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, peroxisome
Any Predictor:	endoplasmic reticulum, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	89.55	86.21
VIT_09s0054g00610.t01	Wine grape	plastid	61.59	57.29
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	58.41	55.15
AT1G51550.1	Thale cress	plastid	56.14	51.67
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	52.95	50.65
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	51.82	49.35
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	51.82	49.24
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	49.09	48.21
TraesCS7B01G197900.1	Wheat	cytosol	46.36	45.95
TraesCS7A01G291800.1	Wheat	cytosol	46.36	45.95
TraesCS7D01G290000.1	Wheat	cytosol	46.14	45.72
HORVU7Hr1G067710.13	Barley	cytosol	46.36	45.54
GSMUA_Achr1P23600_001	Banana	plastid	52.05	44.29
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	47.95	42.54
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	58.18	41.69
OQU80127	Sorghum	cytosol, nucleus, peroxisome	47.95	40.89
KRH02848	Soybean	cytosol	22.05	15.72
KRH19039	Soybean	cytosol	21.82	15.56
KRH12251	Soybean	cytosol	21.36	15.38
KRH37279	Soybean	cytosol	21.14	15.15
KRH60424	Soybean	cytosol	20.45	14.52
KRH41723	Soybean	cytosol, extracellular, nucleus	20.45	13.91

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	UniProt:A0A0R0IU53	EMBL:ACUP02004943	EMBL:ACUP02004944
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_08G221300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KRH44610	ProteinID:KRH44610	ProteinID:KRH44610.1
InterPro:Kelch-typ_b-propeller	PFAM:PF13415	PFAM:PF13418	PFscan:PS50181	PANTHER:PTHR23244	PANTHER:PTHR23244:SF324
SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00023C5E3E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:17972337..17975151

Molecular Weight (calculated)

48811.4 Da

IEP (calculated)

7.840

GRAVY (calculated)

-0.113

Length

440 amino acids

Sequence
(BLAST)

001: MEESEGSGSG NNQSYSSSSS SSGSAISNMA QDYLFTILLL LPIDAILSLS MTCKRFRALS SSHTLWRSLC KRDFGSTCVD SLLNSSNNNQ HHHFPWMRLY
101: KQVSLMDSVC CHKLLVSDLD FPAARASHSL NFVSDCLVLF GGGCEGGRHL DDTWVAYIGN DFRRMLKWQT VHSGIPSGRF GHTCVEMGDC LVLFGGIDDR
201: GNRQNDTWLG HVMFSENNGV TFSWKMLAVG NVAPPPRGAH AACSIDEKRM IIHGGIGLNG LRHTLTCIGR SRTILFGGRG LGYEVLDDVW LLDTYQGYQK
301: WVQIVYDLQS IPDGVSLPRV GHTATLVLGG RLLIYGGENS YRHRKDDFWV LDISAIPYPP CSITQQITVS SKKVLTRMWK RWKSSGHAAN SRSFHRACAD
401: RSGCYLYVFG GMVDGFLQPA EPSGLRFDGE LFLVELVLQL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.