Factsheet for VIT_09s0054g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	61.52	63.68
PGSC0003DMT400068170	Potato	endoplasmic reticulum, plasma membrane, plastid	61.73	62.66
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	57.29	61.59
Bra001813.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	52.22	53.7
AT1G51550.1	Thale cress	plastid	54.12	53.56
CDY32406	Canola	cytosol, endoplasmic reticulum, plastid	52.22	53.46
CDX82216	Canola	cytosol, endoplasmic reticulum, plastid	52.22	53.35
Os08t0230300-00	Rice	cytosol, endoplasmic reticulum, nucleus	48.84	51.56
GSMUA_Achr1P23600_001	Banana	plastid	54.76	50.1
TraesCS7A01G291800.1	Wheat	cytosol	46.09	49.1
TraesCS7B01G197900.1	Wheat	cytosol	45.88	48.87
TraesCS7D01G290000.1	Wheat	cytosol	45.88	48.87
HORVU7Hr1G067710.13	Barley	cytosol	45.67	48.21
Solyc06g063300.2.1	Tomato	endoplasmic reticulum, plastid	61.31	47.23
Zm00001d024365_P001	Maize	cytosol, nucleus, peroxisome	49.26	46.98
OQU80127	Sorghum	cytosol, nucleus, peroxisome	48.63	44.57
VIT_11s0052g00730.t01	Wine grape	cytosol	24.1	20.58
VIT_04s0008g02490.t01	Wine grape	nucleus	23.04	17.78
VIT_01s0011g05810.t01	Wine grape	cytosol	21.14	16.23
VIT_11s0052g00720.t01	Wine grape	cytosol	1.69	6.3

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100263374	wikigene:100263374	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	EMBL:AM472879
ProteinID:CAN68359	ProteinID:CAN68359.1	ProteinID:CBI18459	ProteinID:CBI18459.3	UniProt:D7SS27	InterPro:F-box-like_dom_sf
EMBL:FN594972	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
EntrezGene:LOC100263374	wikigene:LOC100263374	PFAM:PF13415	PFAM:PF13418	PANTHER:PTHR23244	PANTHER:PTHR23244:SF324
SUPFAM:SSF117281	SUPFAM:SSF81383	TIGR:TC62140	UniParc:UPI00015CA310	ArrayExpress:VIT_09s0054g00610	EnsemblPlantsGene:VIT_09s0054g00610
EnsemblPlants:VIT_09s0054g00610.t01	unigene:Vvi.12861	RefSeq:XP_002264976	RefSeq:XP_002264976.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:21401978..21408323

Molecular Weight (calculated)

51880.2 Da

IEP (calculated)

7.318

GRAVY (calculated)

0.004

Length

473 amino acids

Sequence
(BLAST)

001: MAETSTRSSG AATTTSSSYS ASGSPITQMA QDHIFSILLL LPTDSIISFS MTCSRFRSLT FSESLWEAIC RRDWGPTTVD ALKFSAEATN CQQQLSWMRL
101: YKQVCQLDSV SCHRLSGPDA GMVLPKPRAS LSLNFVSDCL VLFGGGSEGG RHIDDTWVAY IGNDFRRMLR WEKITSGIPS GRFGHTCVVI GNHLVLFGGI
201: NDDGIRHNDT WVGQVALNET LGFTVSWRLL DVGSVAPPPR GAHAGCCIGN NRMVIHGGIG LYGLRLGDTW MLDLSENLCF GTWHEVVTHP SPPARSGHTL
301: TCIGGSRTVL FGGRGLSYNV LNDLWLFEFS EVYSKWVQIL YELKNVPGGI SLPRVGHSAT LILGGRVLIY GGEDSQRHRK DDFWVLDTGA ITSVNPINPI
401: PLNSRGLLVN IWKRLNAEGY KPECRSFHGA CTDRSGRFLF VFGGMVDGLI RPAEPAGMRF DAELFLAELV LQL

Best Arabidopsis Sequence Match ( AT1G51550.1 )
(BLAST)

001: MAAESTRNSS PPSTSQSSSP IINLPDDHLL TILLLLPVDS ILSFSMTCKR YKSLACSDSL WEALCEREWG PTSVDALKLS SLRDGFSWML MFQRVYKMDS
101: VCCHKISDPD DDDEESSSFP IPRASHSLNF VNDHLVLFGG GCQGGRHLDD TWTSYVDKSN QSILKWKKVK SGTPSGRFGH TCIVIGEYLL LFGGINDRGE
201: RLNDTWIGQV FCHEGLSWKL LNVGSLQRPR PPPRGAHSAC CIAEKKMVVH GGIGLNGVRL GDTWILELSE DFSSGTWHMV ESPQLPPPRS GHTLTCIREN
301: QVVLFGGRGL GYDVLDDVWI LDIQEPCEEK WIQIFYDFQD VPEYASLPRV GHSATLVLGG RILIYGGEDS YRHRKDDFWV LDVKTIPSSG LKPQGLSLNG
401: SSVWKKLDRI SYGPKSRSFH RACADCSGRF LYVFGGMVDG LLQPAASSGL RFDGELFMVE LVLGFSDLDH QQRPGKSM

Arabidopsis Description

F-box/kelch-repeat protein At1g51550 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.