Factsheet for VIT_04s0008g02490.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00730.t01	Wine grape	cytosol	77.0	85.2
GSMUA_Achr7P15880_001	Banana	cytosol	75.04	80.56
Os06t0694000-01	Rice	cytosol	79.77	77.62
Zm00001d000306_P001	Maize	plastid	13.54	76.85
EER90290	Sorghum	cytosol	78.3	76.07
Zm00001d014594_P001	Maize	cytosol	78.47	75.63
Zm00001d036524_P001	Maize	cytosol	77.49	75.4
EES04532	Sorghum	cytosol	75.2	75.33
TraesCS6B01G426300.1	Wheat	cytosol	78.63	75.19
TraesCS7D01G423400.1	Wheat	cytosol	78.47	75.16
TraesCS7A01G431600.1	Wheat	cytosol	78.63	74.96
Zm00001d015290_P001	Maize	cytosol	73.9	74.38
HORVU7Hr1G099010.1	Barley	cytosol	78.47	74.0
Os02t0150800-01	Rice	cytosol	75.2	74.0
TraesCS6A01G121500.1	Wheat	cytosol	74.71	73.87
TraesCS6B01G149800.1	Wheat	cytosol	74.39	73.79
HORVU6Hr1G022330.1	Barley	cytosol	73.9	73.54
TraesCS6D01G111600.1	Wheat	cytosol	73.57	72.86
GSMUA_Achr3P05120_001	Banana	nucleus	66.56	69.98
VIT_01s0011g05810.t01	Wine grape	cytosol	65.09	64.77
VIT_11s0052g00720.t01	Wine grape	cytosol	9.95	48.03
VIT_09s0054g00610.t01	Wine grape	plastid	17.78	23.04

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100249144	wikigene:100249144	MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1
Gene3D:3.30.450.20	ProteinID:CCB46647	ProteinID:CCB46647.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6H3B0
EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR000014
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	EntrezGene:LOC100249144	wikigene:LOC100249144
InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF07646	PFAM:PF12937	PFAM:PF13415	PFAM:PF13418
PFAM:PF13426	PFscan:PS50112	PANTHER:PTHR23244	PANTHER:PTHR23244:SF421	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF55785	SUPFAM:SSF81383	TIGR:TC58720	TIGRFAMs:TIGR00229	UniParc:UPI0001983033	ArrayExpress:VIT_04s0008g02490
EnsemblPlantsGene:VIT_04s0008g02490	EnsemblPlants:VIT_04s0008g02490.t01	unigene:Vvi.6000	RefSeq:XP_002282691	RefSeq:XP_002282691.1	RefSeq:XP_002282699
RefSeq:XP_002282699.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:2060039..2064728

Molecular Weight (calculated)

66731.7 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.099

Length

613 amino acids

Sequence
(BLAST)

001: MEWDSNSEEG SGGEDEEGFL LSDGGPLPFS AGSLLETAPC GFVVSDALEP DFPIIYVNTG FELVTGYRAE EILGRNCRFL QCRGPFAKRR HQLVDSTVVS
101: EIRRCLELGV EFQGDLLNFR KDGSPLMNRL RLTPIYGDDK TITHVIGIQF FTEANLDLGP LPGSVTKESY RSFDRFSSDL MSSRSIPSGS VNAGHEVCEM
201: FQLSDEVLSH KILSRLTPRD IASVASVCKR LYQLTKNEDL WRLVCQNAWG CETTRVLETV PGAKRLGWVR LARELTTLEA AAWRKLTVGG AVEPSRCNFS
301: ACAVGNRVVL FGGEGVNMQP MNDTFVLDLN ATNPEWQHVK VSSPPPGRWG HTLSCVNDSL LVVFGGCGRQ GLLNDVFVLD LDAKHPTWRE ISGLAPPLPR
401: SWHSSCTLDG TKLVVSGGCA DSGVLLSDTF LLDLATIEKP VWREIPVAWT PPSRLGHSLS VYGGRKILMF GGLAKSGPLR FRSSDVFTMD LSEEEPCWRC
501: VTGSGMPGSG NPAGTAPPPR LDHVAVSLPG GRILIFGGSV AGLHSASQSY LLDPTDEKPT WRILNVPGRP PRFAWGHSTC VVGGTRAIVL GGQTGEEWML
601: SELHELSLAS YVV

Best Arabidopsis Sequence Match ( AT5G57360.1 )
(BLAST)

001: MEWDSGSDLS ADDASSLADD EEGGLFPGGG PIPYPVGNLL HTAPCGFVVT DAVEPDQPII YVNTVFEMVT GYRAEEVLGG NCRFLQCRGP FAKRRHPLVD
101: SMVVSEIRKC IDEGIEFQGE LLNFRKDGSP LMNRLRLTPI YGDDDTITHI IGIQFFIETD IDLGPVLGSS TKEKSIDGIY SALAAGERNV SRGMCGLFQL
201: SDEVVSMKIL SRLTPRDVAS VSSVCRRLYV LTKNEDLWRR VCQNAWGSET TRVLETVPGA KRLGWGRLAR ELTTLEAAAW RKLSVGGSVE PSRCNFSACA
301: VGNRVVLFGG EGVNMQPMND TFVLDLNSDY PEWQHVKVSS PPPGRWGHTL TCVNGSNLVV FGGCGQQGLL NDVFVLNLDA KPPTWREISG LAPPLPRSWH
401: SSCTLDGTKL IVSGGCADSG VLLSDTFLLD LSIEKPVWRE IPAAWTPPSR LGHTLSVYGG RKILMFGGLA KSGPLKFRSS DVFTMDLSEE EPCWRCVTGS
501: GMPGAGNPGG VAPPPRLDHV AVNLPGGRIL IFGGSVAGLH SASQLYLLDP TEDKPTWRIL NIPGRPPRFA WGHGTCVVGG TRAIVLGGQT GEEWMLSELH
601: ELSLASYLT

Arabidopsis Description

ZTLGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KAN2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.