Factsheet for VIT_01s0011g05810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02580.t01
VIT_07s0031g03210.t01
VIT_14s0060g00600.t01
VIT_17s0000g06310.t01
VIT_17s0000g06570.t01
VIT_18s0001g14860.t01
VIT_18s0157g00020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68050.1	VIT_18s0157g00020.t01	AT1G22770.1	17704763
AT1G68050.1	VIT_18s0157g00020.t01	AT1G22770.1	17872410
AT1G68050.1	VIT_14s0060g00600.t01	AT3G05840.1	14749489
AT1G68050.1	VIT_01s0026g02580.t01	AT3G47500.1	16002617
AT1G68050.1	VIT_17s0000g06310.t01	AT3G47500.1	16002617
AT1G68050.1	VIT_07s0031g03210.t01	AT5G08590.1	14749489
AT1G68050.1	VIT_07s0031g03210.t01	AT5G08590.1	17872410
AT1G68050.1	VIT_07s0031g03210.t01	AT5G08590.1	21798944
AT1G68050.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489
AT1G68050.1	VIT_18s0001g14860.t01	AT5G42190.1	15310821
AT1G68050.1	VIT_17s0000g06570.t01	AT5G61380.1	14654842
AT1G68050.1	VIT_01s0026g02580.t01	AT5G62430.1	16002617
AT1G68050.1	VIT_17s0000g06310.t01	AT5G62430.1	16002617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60424	Soybean	cytosol	86.53	85.97
KRH41723	Soybean	cytosol, extracellular, nucleus	83.77	79.75
PGSC0003DMT400051416	Potato	cytosol	81.82	79.5
AT1G68050.1	Thale cress	cytosol	79.87	79.48
Solyc01g005300.2.1	Tomato	cytosol	76.14	77.27
GSMUA_Achr7P11200_001	Banana	cytosol	68.51	73.78
OQU83614	Sorghum	cytosol	70.62	73.23
Zm00001d007445_P001	Maize	cytosol	71.59	72.41
Os11t0547000-01	Rice	cytosol	72.73	71.11
Zm00001d053091_P001	Maize	cytosol	70.62	70.39
TraesCS4B01G157500.1	Wheat	cytosol	67.37	66.94
TraesCS4A01G164000.1	Wheat	cytosol	67.37	66.29
VIT_11s0052g00730.t01	Wine grape	cytosol	59.09	65.7
VIT_04s0008g02490.t01	Wine grape	nucleus	64.77	65.09
VIT_11s0052g00720.t01	Wine grape	cytosol	5.84	28.35
VIT_09s0054g00610.t01	Wine grape	plastid	16.23	21.14

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100255972	wikigene:100255972	MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1
Gene3D:3.30.450.20	ProteinID:CCB50782	ProteinID:CCB50782.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6HFD3
EMBL:FN595752	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009637	GO:GO:0009791	GO:GO:0009908	GO:GO:0009911	GO:GO:0009987
GO:GO:0010468	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_2	EntrezGene:LOC100255972	wikigene:LOC100255972	InterPro:PAC	InterPro:PAS	InterPro:PAS-like_dom_sf
PFAM:PF00646	PFAM:PF07646	PFAM:PF13415	PFAM:PF13418	PFAM:PF13426	PFscan:PS50112
PANTHER:PTHR23244	PANTHER:PTHR23244:SF263	SMART:SM00086	SUPFAM:SSF50965	SUPFAM:SSF55785	SUPFAM:SSF81383
TIGR:TC65340	TIGRFAMs:TIGR00229	UniParc:UPI00021081CD	ArrayExpress:VIT_01s0011g05810	EnsemblPlantsGene:VIT_01s0011g05810	EnsemblPlants:VIT_01s0011g05810.t01
unigene:Vvi.1754	RefSeq:XP_002281284	RefSeq:XP_002281284.1	RefSeq:XP_010651450.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:5581325..5585343

Molecular Weight (calculated)

67988.1 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.233

Length

616 amino acids

Sequence
(BLAST)

001: MADGGGGKED EEGLCSWKRL KCARDEEFGE EVQPLGSFFY PTVPSAFVVS DVLETDFPII YVNSVFETST GYRADEVLGR NCRFLQYRDP RAQRRHPLVD
101: PVVVSEIRRC LEEGIEFQGE LLNFRKDGTP LVNQLRLAPI HDDDGVVTHI IGIQVFSEAK IDLNHVSYPV FKETGYPHVD QSGNYSPVGG QAQHAQHQEI
201: CGFLQLSDEV LAHNILSRLT PRDVASIGSV CRRIRQLTKN EHVRKMVCQN SWGREVTGTL ELMTKKLGWG RLARELTTLE AVCWKKMTVG GAVEPSRCNF
301: SACAAGNRLV LFGGEGVNMQ PMDDTFVLNL DAANPEWRQV SVKSSPPGRW GHTLSCLNGS WLVVFGGCGR QGLLNDVFVL DLDAKHPTWK EVFGGTPPLP
401: RSWHSSCTIE GSKLVVSGGC TDAGVLLSDT YLLDLTTDKP MWREIPTSWA PPSRLGHSLS VYGRTKILMF GGLAKSGHLR LRSGEAYTID LEDERPHWRQ
501: LECSGFTGIG SQSAVVPPPR LDHVAVSMPC GRIIIFGGSI AGLHSPSQLF LLDPSEEKPS WRILNVPGQP PKFAWGHSTC VVGGTRVLVL GGHTGEEWIL
601: NELHELCLAS RQDSDQ

Best Arabidopsis Sequence Match ( AT1G68050.1 )
(BLAST)

001: MAREHAIGEA TGKRKKRGRV EEAEEYCNDG IEEQVEDEKL PLEVGMFYYP MTPPSFIVSD ALEPDFPLIY VNRVFEVFTG YRADEVLGRN CRFLQYRDPR
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL

Arabidopsis Description

ADO3FKF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.