CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90477
KRG91704
KRG96686
KRH01188
KRH03487
KRH03510
KRH08640
KRH33767
KRH35085
KRH40083
KRH54567
KRH54582
KRH56889
KRH56903
KRH63298
KRH63324
KRH68409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68050.1	KRG91704	AT1G22770.1	17704763
AT1G68050.1	KRH08640	AT1G22770.1	17704763
AT1G68050.1	KRH35085	AT1G22770.1	17704763
AT1G68050.1	KRG91704	AT1G22770.1	17872410
AT1G68050.1	KRH08640	AT1G22770.1	17872410
AT1G68050.1	KRH35085	AT1G22770.1	17872410
AT1G68050.1	KRG90477	AT3G05840.1	14749489
AT1G68050.1	KRG96686	AT3G05840.1	14749489
AT1G68050.1	KRH33767	AT3G05840.1	14749489
AT1G68050.1	KRH68409	AT3G05840.1	14749489
AT1G68050.1	KRH03487	AT3G47500.1	16002617
AT1G68050.1	KRH54567	AT3G47500.1	16002617
AT1G68050.1	KRH56903	AT3G47500.1	16002617
AT1G68050.1	KRH63324	AT3G47500.1	16002617
AT1G68050.1	KRH01188	AT5G39660.1	16002617
AT1G68050.1	KRH40083	AT5G39660.1	16002617
AT1G68050.1	KRH03510	AT5G61380.1	14654842
AT1G68050.1	KRH54582	AT5G61380.1	14654842
AT1G68050.1	KRH56889	AT5G61380.1	14654842
AT1G68050.1	KRH63298	AT5G61380.1	14654842
AT1G68050.1	KRH03487	AT5G62430.1	16002617
AT1G68050.1	KRH54567	AT5G62430.1	16002617
AT1G68050.1	KRH56903	AT5G62430.1	16002617
AT1G68050.1	KRH63324	AT5G62430.1	16002617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60424	Soybean	cytosol	88.87	92.74
VIT_01s0011g05810.t01	Wine grape	cytosol	79.75	83.77
AT1G68050.1	Thale cress	cytosol	76.97	80.45
PGSC0003DMT400051416	Potato	cytosol	76.04	77.6
Solyc01g005300.2.1	Tomato	cytosol	70.79	75.45
OQU83614	Sorghum	cytosol	67.85	73.91
GSMUA_Achr7P11200_001	Banana	cytosol	64.14	72.55
Zm00001d007445_P001	Maize	cytosol	68.16	72.41
Zm00001d053091_P001	Maize	cytosol	68.47	71.68
Os11t0547000-01	Rice	cytosol	69.55	71.43
TraesCS4B01G157500.1	Wheat	cytosol	65.53	68.39
TraesCS4A01G164000.1	Wheat	cytosol	65.38	67.57
KRH12251	Soybean	cytosol	60.43	63.99
KRH19039	Soybean	cytosol	60.9	63.86
KRH02848	Soybean	cytosol	60.9	63.86
KRH37279	Soybean	cytosol	60.28	63.52
KRH47295	Soybean	endoplasmic reticulum, plasma membrane, plastid	15.46	21.88
KRH44610	Soybean	endoplasmic reticulum, nucleus, peroxisome	13.91	20.45

Protein Annotations

EntrezGene:100812253	MapMan:19.2.2.8.1.4.4	Gene3D:2.120.10.80	MapMan:26.1.2.3.1	Gene3D:3.30.450.20	EMBL:ACUP02004777
ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_08G046500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	UniProt:I1KQC3	InterPro:IPR000014	InterPro:IPR001810	InterPro:IPR015915
EnsemblPlants:KRH41723	ProteinID:KRH41723	ProteinID:KRH41723.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_2	InterPro:PAC
InterPro:PAS	InterPro:PAS-like_dom_sf	PFAM:PF00646	PFAM:PF07646	PFAM:PF13415	PFAM:PF13418
PFAM:PF13426	PFscan:PS50112	PANTHER:PTHR23244	PANTHER:PTHR23244:SF263	SMART:SM00086	SUPFAM:SSF50965
SUPFAM:SSF55785	SUPFAM:SSF81383	TIGRFAMs:TIGR00229	UniParc:UPI0002964530	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:3657526..3660817

Molecular Weight (calculated)

72328.2 Da

IEP (calculated)

5.538

GRAVY (calculated)

-0.315

Length

647 amino acids

Sequence
(BLAST)

001: MGSSCLCSLF IFESDMAMPK EKEDVQNSGK RLKCTRNEEE EKEQYEQVEA DEEEEEEEDS ELPLKLGLFF YPTIPTSFVV SDALEPDFPI IYVNKVFEIA
101: TGYRADEALG RNCRFLQYRD RRAQRRHPLV DPVVVSEIRR CLEEGVEFQG ELLNFRKDGT PLVNRVRLTL IHDDDGTVTH VIGIQLFSEA NIDLNRVSYP
201: VFKETCNQDF DKNGKYTPKS GQSLYSQHQE MCSILQLSDE VLAHNILSRL TPRDVASIGS VCRRVRQLTK NEHVRKMVCQ NAWGKEVTGT LELMTKKMGW
301: GRLTRELTTL EAVCWRKLTV GGAVEPSRCN FSACAAGNRL VLFGGEGVDM QPMDDTFVLN LDAKNPEWRR VSVKSSPPGR WGHTLSCLNG SWLVVFGGCG
401: RQGLLNDVFV LDLDAQQPTW REVCGGTPPL PRSWHSSCTI EGSKLVVSGG CTDTGVLLSD TYLLDLTTDN PIWREIPTSW APPSRLGHSL SVYGRTKILM
501: FGGLAKSGHL RLRSGEAYTI DLEDEQPQWR QLEYSAFTGL ASQSAVVPPP RLDHVAVSMP CGRIIIFGGS IAGLHSPSQL FLLDPSEEKP SWRILNVPGQ
601: PPKFAWGHST CVVGGTRVLV LGGHTGEEWI LNELHELCLA SRHDSDL

Best Arabidopsis Sequence Match ( AT1G68050.1 )
(BLAST)

001: MAREHAIGEA TGKRKKRGRV EEAEEYCNDG IEEQVEDEKL PLEVGMFYYP MTPPSFIVSD ALEPDFPLIY VNRVFEVFTG YRADEVLGRN CRFLQYRDPR
101: AQRRHPLVDP VVVSEIRRCL EEGIEFQGEL LNFRKDGTPL VNRLRLAPIR DDDGTITHVI GIQVFSETTI DLDRVSYPVF KHKQQLDQTS ECLFPSGSPR
201: FKEHHEDFCG ILQLSDEVLA HNILSRLTPR DVASIGSACR RLRQLTKNES VRKMVCQNAW GKEITGTLEI MTKKLRWGRL ARELTTLEAV CWRKFTVGGI
301: VQPSRCNFSA CAVGNRLVLF GGEGVNMQPL DDTFVLNLDA ECPEWQRVRV TSSPPGRWGH TLSCLNGSWL VVFGGCGRQG LLNDVFVLDL DAKHPTWKEV
401: AGGTPPLPRS WHSSCTIEGS KLVVSGGCTD AGVLLSDTFL LDLTTDKPTW KEIPTSWAPP SRLGHSLSVF GRTKILMFGG LANSGHLKLR SGEAYTIDLE
501: DEEPRWRELE CSAFPGVVVP PPRLDHVAVS MPCGRVIIFG GSIAGLHSPS QLFLIDPAEE KPSWRILNVP GKPPKLAWGH STCVVGGTRV LVLGGHTGEE
601: WILNELHELC LASRQDSDL

Arabidopsis Description

ADO3FKF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.