CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91429
KRG91704
KRH08640
KRH35085
KRH35393
KRH41723
KRH60424

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	KRH41723	AT1G68050.1	16002617
AT3G47500.1	KRH60424	AT1G68050.1	16002617
AT5G62430.1	KRG91704	AT1G22770.1	17872410
AT5G62430.1	KRH08640	AT1G22770.1	17872410
AT5G62430.1	KRH35085	AT1G22770.1	17872410
AT5G62430.1	KRH41723	AT1G68050.1	16002617
AT5G62430.1	KRH60424	AT1G68050.1	16002617
AT5G62430.1	KRG91429	AT5G51910.1	21798944
AT5G62430.1	KRH35393	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03487	Soybean	nucleus	89.43	89.81
KRH63324	Soybean	nucleus	62.16	62.55
KRH54567	Soybean	nucleus	60.47	62.45
CDY69084	Canola	nucleus	34.46	59.49
AT5G62430.1	Thale cress	nucleus	37.21	59.06
CDY67518	Canola	nucleus	36.36	58.9
CDY69244	Canola	nucleus	36.36	58.9
Bra029261.1-P	Field mustard	nucleus	35.52	57.53
CDY00286	Canola	nucleus	33.19	57.51
VIT_17s0000g06310.t01	Wine grape	nucleus	57.29	57.29
Bra010082.1-P	Field mustard	nucleus	31.5	55.6
Bra018141.1-P	Field mustard	nucleus	47.15	52.22
CDY66672	Canola	nucleus	47.15	52.22
CDY47405	Canola	nucleus	47.36	52.21
KRH01188	Soybean	nucleus	54.76	51.7
VIT_01s0026g02580.t01	Wine grape	nucleus	51.8	51.36
AT3G47500.1	Thale cress	nucleus	47.99	50.67
KRH40083	Soybean	nucleus	53.7	50.5
Solyc03g115940.2.1	Tomato	nucleus	52.01	49.1
PGSC0003DMT400050273	Potato	nucleus	51.37	48.31
KRH74885	Soybean	nucleus	48.63	48.02
KRH70746	Soybean	nucleus, plastid	47.15	45.98
KRH50577	Soybean	nucleus	46.09	45.51
KRH18471	Soybean	nucleus	46.72	45.29
KRH42862	Soybean	nucleus	7.4	44.87
KRG89621	Soybean	nucleus	44.82	43.98
KRH21283	Soybean	nucleus	13.53	43.54
PGSC0003DMT400083080	Potato	nucleus	43.97	42.28
KRH11011	Soybean	nucleus	13.53	41.83
KRG93541	Soybean	nucleus	34.04	41.82
Solyc06g069760.2.1	Tomato	nucleus	43.34	41.67
KRH58964	Soybean	nucleus	14.38	41.21
Os03t0169600-01	Rice	nucleus	35.52	38.18
EER95426	Sorghum	nucleus	34.04	37.97
TraesCS4A01G017700.1	Wheat	nucleus	34.67	37.53
TraesCS4B01G286400.1	Wheat	nucleus	34.04	37.18
Zm00001d027846_P001	Maize	nucleus	33.62	36.81
TraesCS4D01G285100.1	Wheat	nucleus	34.25	36.65
OQU90492	Sorghum	nucleus	37.42	36.57
Os07t0685000-02	Rice	nucleus	36.58	36.34
HORVU4Hr1G074990.1	Barley	nucleus	33.62	35.97
KRH64974	Soybean	nucleus	34.04	34.92
KRG94921	Soybean	nucleus	35.52	34.78
HORVU2Hr1G017290.1	Barley	nucleus	34.46	34.32
TraesCS2A01G100800.1	Wheat	nucleus	34.67	34.24
TraesCS2B01G118000.1	Wheat	nucleus	34.46	34.03
Zm00001d022525_P001	Maize	nucleus	36.58	33.59
KRH44749	Soybean	nucleus	30.23	32.95
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	34.46	32.53
KRH09992	Soybean	nucleus	13.95	31.28
KRH47156	Soybean	nucleus	13.95	31.28
KRH70017	Soybean	nucleus	15.22	30.77
KRH13096	Soybean	nucleus, vacuole	30.23	30.69
KRH44186	Soybean	nucleus	13.74	30.52
KRH23341	Soybean	nucleus	13.53	30.19
KRH08373	Soybean	nucleus	14.16	28.39

Protein Annotations

EntrezGene:100817354	MapMan:15.5.1.5	EMBL:ACUP02002800	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G025900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1JZN7	InterPro:IPR003851	EnsemblPlants:KRH56903	ProteinID:KRH56903	ProteinID:KRH56903.1
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7
UniParc:UPI000233A6E6	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2261858..2264672

Molecular Weight (calculated)

52158.8 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.865

Length

473 amino acids

Sequence
(BLAST)

001: MHEIRDPAIR LFGQKIPFPE DVVVDKEEKE IESGEEREQE MEKYEDQGHK DAGVENVTEE ELEVDPPPNA EETKNSGSSP EAIVNPKTPS IEEETEKSKG
101: DKTEKEQGDA ANSQEKTLKK PDKVLPCPRC KSMDTKFCYY NNYNVNQPRY FCKACQRYWT AGGTMRNVPV GAGRRKNKNS TSHYRHITIS EALQAARIDS
201: HLPPLKGNGR VLSFGLDAHA PICDSMASVN NLGEKKPLNC TRNGFHHGFE DQRLPPVPCK SGENGDDSST TSSITVSSSK GENNKNTFQQ QSVPQNHGFL
301: PQLPCIPGVS WPYTWNSPVP PPAMCPSGFP LPFYPATFWN CGMPGNWNVP LFSSHSSASN LESRSSSPNS PTLGKHSRDG DMIKQYSLPK EEASKPRNGG
401: VLVPKTLRID DPSEAAKSSI WATLGIKNES VSGGGMFKAF QSKKNEKNHV EASPLLMANP AALSRSLNFH ENS

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.