Factsheet for TraesCS4B01G286400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G116300.1
TraesCS3B01G135400.1
TraesCS3D01G118200.2
TraesCS4A01G164000.1
TraesCS4A01G355900.1
TraesCS4B01G157500.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	TraesCS4A01G164000.1	AT1G68050.1	16002617
AT3G47500.1	TraesCS4B01G157500.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS3A01G116300.1	AT1G22770.1	17872410
AT5G62430.1	TraesCS3B01G135400.1	AT1G22770.1	17872410
AT5G62430.1	TraesCS3D01G118200.2	AT1G22770.1	17872410
AT5G62430.1	TraesCS4A01G164000.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS4B01G157500.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G285100.1	Wheat	nucleus	96.3	94.34
TraesCS4A01G017700.1	Wheat	nucleus	94.69	93.82
HORVU4Hr1G074990.1	Barley	nucleus	93.53	91.63
Os03t0169600-01	Rice	nucleus	75.29	74.09
EER95426	Sorghum	nucleus	70.21	71.7
Zm00001d027846_P001	Maize	nucleus	65.13	65.28
CDY00286	Canola	nucleus	26.79	42.49
CDY69084	Canola	nucleus	26.79	42.34
AT5G62430.1	Thale cress	nucleus	28.87	41.95
CDY67518	Canola	nucleus	27.94	41.44
CDY69244	Canola	nucleus	27.71	41.1
Bra029261.1-P	Field mustard	nucleus	27.48	40.75
Bra010082.1-P	Field mustard	nucleus	24.94	40.3
VIT_17s0000g06310.t01	Wine grape	nucleus	39.26	35.94
VIT_01s0026g02580.t01	Wine grape	nucleus	38.34	34.8
CDY47405	Canola	nucleus	34.18	34.5
KRH56903	Soybean	nucleus	37.18	34.04
CDY66672	Canola	nucleus	33.49	33.96
Bra018141.1-P	Field mustard	nucleus	33.49	33.96
KRH03487	Soybean	nucleus	36.49	33.55
AT3G47500.1	Thale cress	nucleus	34.41	33.26
KRH18471	Soybean	nucleus	37.41	33.2
KRH63324	Soybean	nucleus	36.03	33.19
KRH54567	Soybean	nucleus	35.1	33.19
TraesCS3B01G329700.1	Wheat	nucleus	15.47	32.84
TraesCS1B01G347400.1	Wheat	plastid	15.7	32.54
PGSC0003DMT400050273	Potato	nucleus	37.41	32.21
Solyc03g115940.2.1	Tomato	nucleus	37.18	32.14
KRG93541	Soybean	nucleus	28.41	31.95
TraesCS3B01G305400.1	Wheat	nucleus	10.85	30.52
PGSC0003DMT400083080	Potato	nucleus	34.41	30.28
Solyc06g069760.2.1	Tomato	nucleus	33.72	29.67
TraesCS3B01G210300.1	Wheat	nucleus	36.49	29.31
TraesCS2B01G118000.1	Wheat	nucleus	31.87	28.81
TraesCS2B01G592900.1	Wheat	nucleus	13.63	28.5
TraesCS2B01G592600.1	Wheat	nucleus	11.78	27.42
TraesCS2B01G592800.1	Wheat	nucleus, plastid	12.7	25.94
TraesCS2B01G592700.1	Wheat	nucleus	12.47	24.32
TraesCS3B01G125100.1	Wheat	nucleus	12.01	22.61
TraesCS4B01G081500.1	Wheat	nucleus	13.16	21.51
TraesCS5B01G249800.1	Wheat	nucleus	13.63	21.0

Protein Annotations

EnsemblPlants:TraesCS4B01G286400.1	EnsemblPlantsGene:TraesCS4B01G286400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31089	PANTHER:PTHR31089:SF3	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr4B:+:570084740..570086809

Molecular Weight (calculated)

46780.7 Da

IEP (calculated)

8.205

GRAVY (calculated)

-0.663

Length

433 amino acids

Sequence
(BLAST)

001: MGQLRAAAGA GGDCLIKLFG KTIPVPDAGA GDVHKDLQHR GSTTAEPKVQ EIAPQDSMGS PQQPEVVDVE DPSAAKNSAA DQQDEEQGDT ANQKEKLKKP
101: DKILPCPRCS SMDTKFCYYN NYNINQPRHF CKNCQRYWTA GGAMRNVPVG AGRRKSKSIS AASHFLQRIR AALPGDPLCT PVNTNGTVLS FGSNASTLDV
201: SEQMKHIKEL NSVTRTENTD APSVGSSAEG WAKGEESSQM NSRERVAAER SANCAQHPCM NGAAMWPFSC APSPAYFASN VAIPFYPAAA AAYWGCMVPG
301: AWNTPWQPQP QCQSSSLPSA ASPVSTMSSC FQSRKHPRDG DEERDTKGNG KVWVPKTIRI DDVDEVARSS IWSLIGIKGD KVEKDDGKGC KLARVFDPKD
401: EAKMSSHRGN NSLPFLKGNP AALSRSVNFQ ERS

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.