Factsheet for TraesCS4A01G017700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G116300.1
TraesCS3B01G135400.1
TraesCS3D01G118200.2
TraesCS4A01G164000.1
TraesCS4A01G355900.1
TraesCS4B01G157500.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	TraesCS4A01G164000.1	AT1G68050.1	16002617
AT3G47500.1	TraesCS4B01G157500.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS3A01G116300.1	AT1G22770.1	17872410
AT5G62430.1	TraesCS3B01G135400.1	AT1G22770.1	17872410
AT5G62430.1	TraesCS3D01G118200.2	AT1G22770.1	17872410
AT5G62430.1	TraesCS4A01G164000.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS4B01G157500.1	AT1G68050.1	16002617
AT5G62430.1	TraesCS4A01G355900.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5A01G309300.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5B01G310000.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5B01G516200.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5D01G316300.1	AT5G51910.1	21798944
AT5G62430.1	TraesCS5D01G516300.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G285100.1	Wheat	nucleus	96.34	95.25
TraesCS4B01G286400.1	Wheat	nucleus	93.82	94.69
HORVU4Hr1G074990.1	Barley	nucleus	93.14	92.08
Os03t0169600-01	Rice	nucleus	75.29	74.77
EER95426	Sorghum	nucleus	70.25	72.41
Zm00001d027846_P001	Maize	nucleus	65.22	65.97
CDY00286	Canola	nucleus	27.0	43.22
CDY69084	Canola	nucleus	27.0	43.07
AT5G62430.1	Thale cress	nucleus	29.06	42.62
CDY67518	Canola	nucleus	28.15	42.12
CDY69244	Canola	nucleus	27.92	41.78
Bra029261.1-P	Field mustard	nucleus	27.69	41.44
Bra010082.1-P	Field mustard	nucleus	25.17	41.04
VIT_17s0000g06310.t01	Wine grape	nucleus	39.13	36.15
VIT_01s0026g02580.t01	Wine grape	nucleus	38.9	35.64
KRH56903	Soybean	nucleus	37.53	34.67
KRH03487	Soybean	nucleus	37.3	34.61
CDY47405	Canola	nucleus	33.64	34.27
KRH54567	Soybean	nucleus	35.7	34.06
KRH63324	Soybean	nucleus	36.61	34.04
CDY66672	Canola	nucleus	33.18	33.96
Bra018141.1-P	Field mustard	nucleus	33.18	33.96
AT3G47500.1	Thale cress	nucleus	34.55	33.71
KRH18471	Soybean	nucleus	37.53	33.61
TraesCS3A01G306800.1	Wheat	nucleus	15.33	33.17
KRG93541	Soybean	nucleus	28.83	32.73
PGSC0003DMT400050273	Potato	nucleus	37.53	32.6
TraesCS1A01G334100.1	Wheat	nucleus, plastid	15.56	32.54
Solyc03g115940.2.1	Tomato	nucleus	37.3	32.53
TraesCS3A01G271700.1	Wheat	nucleus	11.21	31.61
PGSC0003DMT400083080	Potato	nucleus	34.55	30.69
Solyc06g069760.2.1	Tomato	nucleus	33.87	30.08
TraesCS2A01G590700.1	Wheat	nucleus	13.5	29.35
TraesCS2A01G100800.1	Wheat	nucleus	32.04	29.23
TraesCS3A01G180600.1	Wheat	nucleus	35.93	29.13
TraesCS2A01G590800.1	Wheat	plastid	14.19	28.31
TraesCS3A01G189600.1	Wheat	nucleus	29.98	27.52
TraesCS2A01G591200.1	Wheat	nucleus, plastid	13.04	26.64
TraesCS2A01G591100.1	Wheat	nucleus, plastid	12.81	26.54
TraesCS2A01G591000.1	Wheat	mitochondrion, nucleus	13.04	22.89
TraesCS3A01G106500.1	Wheat	nucleus	12.13	22.27
TraesCS5A01G251800.1	Wheat	nucleus	14.19	22.06
TraesCS4A01G234000.1	Wheat	nucleus	12.81	21.05

Protein Annotations

EnsemblPlants:TraesCS4A01G017700.1	EnsemblPlantsGene:TraesCS4A01G017700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	InterPro:Znf_Dof	PANTHER:PTHR31089	PANTHER:PTHR31089:SF3	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	ScanProsite:PS01361	SEG:seg	MapMan:15.5.1.5	:	:

Description

No Description!

Coordinates

chr4A:-:11716514..11718496

Molecular Weight (calculated)

47275.1 Da

IEP (calculated)

7.973

GRAVY (calculated)

-0.750

Length

437 amino acids

Sequence
(BLAST)

001: MGQLRAAPGG GGDCLIKLFG KTIPVPDAGD KDLQHRGSSA TAEPKVQEIA PQDSTGSPPQ QPEVVDVEDP SAAKNSAADQ QDEEQGDTAN QKEKLKKPDK
101: ILPCPRCSSM DTKFCYYNNY NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSLSAA SHFLQRIRAA LPGDPLCTPV NTNGTVLSFG SDASTLDVSE
201: QMKHIKDLSS VTRTENTDAP SVGSSAEGWA KGEESSQMNP RERVAADRSA NFVQHPCMNG AAMWPFSCAP PPAYFPSNVA IPFYPAAAAA YWGCMVPGAW
301: NTPWQPQPQP QPQSQCQSSS PPSAASPVST MSSCFQSRKH PRDGDEERDT KGNGKVWVPK TIRIDDVDEV ARSSIWSLIG IKGDKEEKDD GKGCKLARVF
401: DPKDEAKTSS HRGNNSLPFL KGNPAALSRS VNFHERS

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.