Factsheet for Bra018141.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66672	Canola	nucleus	100.0	100.0
CDY47405	Canola	nucleus	96.96	96.5
AT3G47500.1	Thale cress	nucleus	82.9	79.02
Bra029261.1-P	Field mustard	nucleus	44.96	65.75
Bra010082.1-P	Field mustard	nucleus	39.58	63.06
Bra030124.1-P	Field mustard	nucleus	13.58	47.54
KRH54567	Soybean	nucleus	50.82	47.38
KRH56903	Soybean	nucleus	52.22	47.15
KRH03487	Soybean	nucleus	51.99	47.13
VIT_17s0000g06310.t01	Wine grape	nucleus	51.99	46.93
KRH63324	Soybean	nucleus	50.35	45.74
VIT_01s0026g02580.t01	Wine grape	nucleus	48.24	43.19
Solyc03g115940.2.1	Tomato	nucleus	47.78	40.72
Bra032292.1-P	Field mustard	nucleus	16.16	39.43
PGSC0003DMT400050273	Potato	nucleus	45.9	38.97
Bra010848.1-P	Field mustard	nucleus	15.93	38.86
Bra021895.1-P	Field mustard	nucleus	14.52	36.9
PGSC0003DMT400083080	Potato	nucleus	40.98	35.57
Solyc06g069760.2.1	Tomato	nucleus	40.28	34.96
EER95426	Sorghum	nucleus	34.66	34.91
OQU90492	Sorghum	nucleus	39.34	34.71
Bra024683.1-P	Field mustard	nucleus	26.46	34.56
Os07t0685000-02	Rice	nucleus	38.41	34.45
TraesCS2A01G100800.1	Wheat	nucleus	38.41	34.24
HORVU2Hr1G017290.1	Barley	nucleus	37.94	34.11
TraesCS2B01G118000.1	Wheat	nucleus	38.17	34.03
Bra004396.1-P	Field mustard	nucleus	29.27	33.97
Bra003994.1-P	Field mustard	nucleus	30.45	33.68
Zm00001d027846_P001	Maize	nucleus	33.96	33.56
TraesCS4B01G286400.1	Wheat	nucleus	33.96	33.49
Os03t0169600-01	Rice	nucleus	34.19	33.18
TraesCS4A01G017700.1	Wheat	nucleus	33.96	33.18
HORVU4Hr1G074990.1	Barley	nucleus	34.19	33.03
Bra028437.1-P	Field mustard	nucleus	30.91	33.0
TraesCS4D01G285100.1	Wheat	nucleus	33.96	32.81
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	38.41	32.73
Bra025655.1-P	Field mustard	nucleus	33.49	32.13
Zm00001d022525_P001	Maize	nucleus	38.64	32.04
Bra016286.1-P	Field mustard	nucleus	24.36	31.04
Bra036082.1-P	Field mustard	nucleus	15.46	29.73
Bra011800.1-P	Field mustard	nucleus, plastid	16.16	28.51
Bra031269.1-P	Field mustard	nucleus	12.65	28.27
Bra030010.1-P	Field mustard	nucleus	15.22	27.66
Bra012901.1-P	Field mustard	nucleus	15.46	27.27
Bra037135.1-P	Field mustard	nucleus	13.35	26.89
Bra030423.1-P	Field mustard	nucleus	11.24	25.95
Bra012119.1-P	Field mustard	nucleus	13.35	25.91
Bra001822.1-P	Field mustard	nucleus	12.41	25.85
Bra014297.1-P	Field mustard	nucleus	11.94	25.5
Bra023888.1-P	Field mustard	nucleus	11.94	25.5
Bra015609.1-P	Field mustard	nucleus	12.41	23.77

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra018141	EnsemblPlants:Bra018141.1	EnsemblPlants:Bra018141.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4DNQ4	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI000253F459	InterPro:Znf_Dof	SEG:seg	:

Description

AT3G47500 (E=8e-165) CDF3 | CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor

Coordinates

chrA06:+:10564737..10566516

Molecular Weight (calculated)

46958.8 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.898

Length

427 amino acids

Sequence
(BLAST)

001: MMMESRDPAI KLFGMKIPFP AVFEPTTAVA LEEDYSGGDD TSPEKVTTEQ ATPEKKNNCN NKSLNNSNDS KPETGDKEEA TSTDQIESDE TNQQTTADGK
101: TLKKPTKILP CPRCKSMDTK FCYYNNYNIN QPRHFCKACQ RYWTAGGTMR NVPVGAGRRK HKSSSSQYRH ITISEALQAA RLDPGLQANT RVLSFGLQAP
201: HQQHAAPMTP VMKLQGDQKV SNGARNARVE NGDDCSSGSS VTTSVDETRA QSCRVVEPQV NNNNMNGYAC IPGVPWPYTW NPAMPPPGFY PPPGYPMPFY
301: PYWTIPMAPP NQSSSPMSQK GSSPNSPTLG KHYRDEDSST ERKQRNGCVI VPKTLRIDDP NEAAKSSIWT TLGIKNEGST LGSKGGGMFK GFDQKTNKSN
401: KDQTNNSHVL SANPAALSRS LNFQERV

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.