Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra022568.1-P | |
| Bra024536.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62430.1 | Bra024536.1-P | AT1G22770.1 | 17872410 |
| AT5G62430.1 | Bra022568.1-P | AT5G51910.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69244 | Canola | nucleus | 98.29 | 98.29 |
| CDY67518 | Canola | nucleus | 96.92 | 96.92 |
| Bra010082.1-P | Field mustard | nucleus | 72.95 | 79.48 |
| AT5G62430.1 | Thale cress | nucleus | 77.74 | 76.17 |
| Bra030124.1-P | Field mustard | nucleus | 18.84 | 45.08 |
| Bra018141.1-P | Field mustard | nucleus | 65.75 | 44.96 |
| Bra032292.1-P | Field mustard | nucleus | 22.95 | 38.29 |
| KRH54567 | Soybean | nucleus | 57.19 | 36.46 |
| Bra010848.1-P | Field mustard | nucleus | 21.58 | 36.0 |
| KRH56903 | Soybean | nucleus | 57.53 | 35.52 |
| KRH03487 | Soybean | nucleus | 57.19 | 35.46 |
| Bra021895.1-P | Field mustard | nucleus | 20.21 | 35.12 |
| KRH63324 | Soybean | nucleus | 56.51 | 35.11 |
| VIT_17s0000g06310.t01 | Wine grape | nucleus | 55.82 | 34.46 |
| Bra024683.1-P | Field mustard | nucleus | 37.33 | 33.33 |
| VIT_01s0026g02580.t01 | Wine grape | nucleus | 54.11 | 33.12 |
| Bra003994.1-P | Field mustard | nucleus | 41.1 | 31.09 |
| Bra028437.1-P | Field mustard | nucleus | 42.12 | 30.75 |
| Bra004396.1-P | Field mustard | nucleus | 38.7 | 30.71 |
| Bra025655.1-P | Field mustard | nucleus | 45.89 | 30.11 |
| Solyc03g115940.2.1 | Tomato | nucleus | 51.37 | 29.94 |
| PGSC0003DMT400050273 | Potato | nucleus | 49.66 | 28.83 |
| PGSC0003DMT400083080 | Potato | nucleus | 47.95 | 28.46 |
| Solyc06g069760.2.1 | Tomato | nucleus | 47.95 | 28.46 |
| TraesCS4A01G017700.1 | Wheat | nucleus | 41.44 | 27.69 |
| EER95426 | Sorghum | nucleus | 40.07 | 27.59 |
| Os03t0169600-01 | Rice | nucleus | 41.44 | 27.5 |
| TraesCS4B01G286400.1 | Wheat | nucleus | 40.75 | 27.48 |
| Bra031269.1-P | Field mustard | nucleus | 17.81 | 27.23 |
| Bra016286.1-P | Field mustard | nucleus | 31.16 | 27.16 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 41.1 | 27.15 |
| HORVU4Hr1G074990.1 | Barley | nucleus | 40.75 | 26.92 |
| Zm00001d027846_P001 | Maize | nucleus | 39.04 | 26.39 |
| Bra036082.1-P | Field mustard | nucleus | 19.86 | 26.13 |
| Bra023888.1-P | Field mustard | nucleus | 17.47 | 25.5 |
| OQU90492 | Sorghum | nucleus | 42.12 | 25.41 |
| Os07t0685000-02 | Rice | nucleus | 41.1 | 25.21 |
| Bra001822.1-P | Field mustard | nucleus | 17.47 | 24.88 |
| Bra011800.1-P | Field mustard | nucleus, plastid | 20.55 | 24.79 |
| TraesCS2A01G100800.1 | Wheat | nucleus | 40.07 | 24.43 |
| HORVU2Hr1G017290.1 | Barley | nucleus | 39.73 | 24.42 |
| Bra030010.1-P | Field mustard | nucleus | 19.52 | 24.26 |
| Zm00001d022525_P001 | Maize | nucleus | 42.47 | 24.08 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 39.38 | 24.01 |
| Bra014297.1-P | Field mustard | nucleus | 16.44 | 24.0 |
| Bra012119.1-P | Field mustard | nucleus | 17.81 | 23.64 |
| Bra037135.1-P | Field mustard | nucleus | 17.12 | 23.58 |
| Bra015609.1-P | Field mustard | nucleus | 17.81 | 23.32 |
| Bra030423.1-P | Field mustard | nucleus | 14.73 | 23.24 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 39.73 | 23.15 |
| Bra012901.1-P | Field mustard | nucleus | 19.18 | 23.14 |
Protein Annotations
| MapMan:15.5.1.5 | EnsemblPlantsGene:Bra029261 | EnsemblPlants:Bra029261.1 | EnsemblPlants:Bra029261.1-P | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003851 | UniProt:M4EKE4 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF7 | UniParc:UPI0002545D9B | InterPro:Znf_Dof | : |
Description
AT5G62430 (E=1e-133) CDF1 | CDF1 (CYCLING DOF FACTOR 1); DNA binding / protein binding / transcription factor
Coordinates
chrA02:-:26257713..26259235
Molecular Weight (calculated)
33408.3 Da
IEP (calculated)
8.808
GRAVY (calculated)
-0.889
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MLESKDPAIK LFGMKIPLSS TVFEAEEDEL SAEQNQNETL TDQSDKDKTL KKPTKILPCP RCNSMETKFC YYNNYNVNQP RHFCKACRRY WTPGGTMRSV
101: PVGAGRRKNK NNSSSHYRHV TINETNGPVL SFNLRDDHKT LEKNNHQPVD DSRTRNNEMN GLRCIPGVSW PYTWNHGFYP VYPYWNMPMV SSSPYSTPNS
201: TIGKHSREED ETIKRKQMNG SVLVPKTLRV DDPNEAAKSS IWTTLGIKNE VMFKGFDSKK EVSINKEETE TSLVLCANPA ALSRSVNFHE QM
101: PVGAGRRKNK NNSSSHYRHV TINETNGPVL SFNLRDDHKT LEKNNHQPVD DSRTRNNEMN GLRCIPGVSW PYTWNHGFYP VYPYWNMPMV SSSPYSTPNS
201: TIGKHSREED ETIKRKQMNG SVLVPKTLRV DDPNEAAKSS IWTTLGIKNE VMFKGFDSKK EVSINKEETE TSLVLCANPA ALSRSVNFHE QM
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Arabidopsis Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.