Factsheet for PGSC0003DMT400083080

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002842
PGSC0003DMT400048370
PGSC0003DMT400051416
PGSC0003DMT400062327

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	PGSC0003DMT400051416	AT1G68050.1	16002617
AT5G62430.1	PGSC0003DMT400002842	AT1G22770.1	17872410
AT5G62430.1	PGSC0003DMT400048370	AT1G22770.1	17872410
AT5G62430.1	PGSC0003DMT400051416	AT1G68050.1	16002617
AT5G62430.1	PGSC0003DMT400062327	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069760.2.1	Tomato	nucleus	94.11	94.11
PGSC0003DMT400050273	Potato	nucleus	56.3	55.07
CDY69084	Canola	nucleus	27.85	50.0
CDY00286	Canola	nucleus	27.64	49.82
CDY67518	Canola	nucleus	29.47	49.66
VIT_17s0000g06310.t01	Wine grape	nucleus	47.36	49.26
AT5G62430.1	Thale cress	nucleus	29.67	48.99
CDY69244	Canola	nucleus	28.86	48.63
Bra029261.1-P	Field mustard	nucleus	28.46	47.95
Bra010082.1-P	Field mustard	nucleus	25.81	47.39
KRH03487	Soybean	nucleus	42.68	44.59
VIT_01s0026g02580.t01	Wine grape	nucleus	42.89	44.23
KRH54567	Soybean	nucleus	41.06	44.1
KRH56903	Soybean	nucleus	42.28	43.97
PGSC0003DMT400087458	Potato	nucleus	14.63	43.64
KRH63324	Soybean	nucleus	41.67	43.62
PGSC0003DMT400064695	Potato	nucleus	41.06	43.44
CDY66672	Canola	nucleus	35.57	40.98
Bra018141.1-P	Field mustard	nucleus	35.57	40.98
CDY47405	Canola	nucleus	35.57	40.79
AT3G47500.1	Thale cress	nucleus	36.59	40.18
PGSC0003DMT400047370	Potato	nucleus	35.98	40.05
PGSC0003DMT400003359	Potato	nucleus	35.37	35.73
EER95426	Sorghum	nucleus	30.08	34.91
TraesCS4A01G017700.1	Wheat	nucleus	30.69	34.55
Os03t0169600-01	Rice	nucleus	30.89	34.55
TraesCS4B01G286400.1	Wheat	nucleus	30.28	34.41
TraesCS4D01G285100.1	Wheat	nucleus	30.89	34.39
Os07t0685000-02	Rice	nucleus	33.13	34.24
HORVU4Hr1G074990.1	Barley	nucleus	30.49	33.94
TraesCS2A01G100800.1	Wheat	nucleus	32.93	33.82
HORVU2Hr1G017290.1	Barley	nucleus	32.52	33.68
TraesCS2B01G118000.1	Wheat	nucleus	32.72	33.61
Zm00001d027846_P001	Maize	nucleus	29.47	33.56
OQU90492	Sorghum	nucleus	32.93	33.47
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	33.13	32.53
PGSC0003DMT400034111	Potato	nucleus	12.8	32.47
PGSC0003DMT400006421	Potato	nucleus	13.41	31.73
Zm00001d022525_P001	Maize	nucleus	33.13	31.65
PGSC0003DMT400026137	Potato	nucleus	13.62	27.92
PGSC0003DMT400030496	Potato	nucleus	9.76	24.49

Protein Annotations

EntrezGene:102583986	MapMan:15.5.1.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851
UniProt:M1D6F9	PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400033046	PGSC:PGSC0003DMG400033046	EnsemblPlants:PGSC0003DMT400083080
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI0002967C67	RefSeq:XP_006354775.1
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

Dof zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033046]

Coordinates

chr6:-:51598497..51601151

Molecular Weight (calculated)

53528.3 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.808

Length

492 amino acids

Sequence
(BLAST)

001: MTCDSEIKLF GKILPVVVSG AGRGLSGSDG VRYEGNRNRS DLDRCLEGSK ASSVEKDEGI EYEKQEAEKD DISGELSEAK SEEGDQNQMM EESENTKTPS
101: ESESSPKSST EEDPQAVKSS ETGNEPTNVS NSEQNNLKKP DKILPCPRCN SSDTKFCYYN NNNVNQPRHF CRSCQRYWTA GGTMRNLPVG AGRRKNKNLA
201: SQYRHISIPE GLLAAGIESP NGLIHHPIFK PNGTILSFGP DIPLCEPMAS ALNQAEKRVS NGIQNGSHKS EVNNSSCKGG DTGDECYRGS NIPTPNMMVE
301: EGKGEAHKAV MHGINGIPSP VPCLHGVPWP FPWNAAVPMS AICPIPFPMP FFPTPYWNCS VPPWSNPWLS PPLRAANEKT SGSDPTSPLG KHSREGDLLK
401: PSNPGGKEQS DQKYSEGSIL VPKTLRIDDP DEAAKSSIWS TLGIKYDSAN RGEFFKALQP KSNDKHNKAN TSPVLHTNPA ALSRSITFQQ SA

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.