Factsheet for PGSC0003DMT400064695

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067230.2.1	Tomato	nucleus	95.91	95.5
PGSC0003DMT400003359	Potato	nucleus	54.84	52.36
PGSC0003DMT400087458	Potato	nucleus	16.34	46.06
PGSC0003DMT400047370	Potato	nucleus	43.66	45.93
PGSC0003DMT400050273	Potato	nucleus	46.45	42.94
PGSC0003DMT400083080	Potato	nucleus	43.44	41.06
TraesCS3A01G189600.1	Wheat	nucleus	35.7	34.87
TraesCS3D01G193100.1	Wheat	nucleus	35.7	34.87
Os01t0277500-01	Rice	nucleus	38.71	32.49
Zm00001d040455_P001	Maize	nucleus	35.48	32.16
EES00579	Sorghum	nucleus	34.84	31.64
PGSC0003DMT400034111	Potato	nucleus	13.12	31.44
PGSC0003DMT400006421	Potato	nucleus	13.98	31.25
PGSC0003DMT400030496	Potato	nucleus	11.83	28.06
PGSC0003DMT400026137	Potato	nucleus	13.98	27.08

Protein Annotations

EntrezGene:102600000	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1CCR2
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400025129	PGSC:PGSC0003DMG400025129	EnsemblPlants:PGSC0003DMT400064695	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI00029525F6	RefSeq:XP_006363404.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025129]

Coordinates

chr2:-:25588000..25591776

Molecular Weight (calculated)

51078.9 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.824

Length

465 amino acids

Sequence
(BLAST)

001: MTDPAIKLFG RTIQFPDSSG AHGDDSLPED NNGEEEDEEA HKDDFGGNLD DDEDEMEILT GKVLQDQNSE PTRTDSMKEP PVDNDCSTRP SKSEEEQGEA
101: SNSQEKILKK PDKIIPCPRC NSMETKFCYF NNYNVNQPRH FCKSCQRYWT AGGTMRNVPV GAGRRKNKNS IPHYRQISVS ETLSNAQTAY PNGVQQPILA
201: FGSPTPLCES MASVLNIADK TMHNCSQNGF HKPQEPGVPV SYVAGDNGDD HSRRSSVTSA NSEDEVNKTV PDLLKKNCHN FPPYMTCYPG APWPYPCSPV
301: PWNSAVPPPG YCPPGFPMPF YPAASYWGYT VAGSWNVPWM PPATVSLIQT PTTSGPNSPT LGKHSRDENV QKPLSSMEEP SNESNPEKCL WVPKTLRIDD
401: PGEAAKSSIW ATLGIKHDTV DSVGGSPFSA FQPKNDDNNR VSENSTVLQA NPAALSRSVN FNESL

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.