Factsheet for PGSC0003DMT400030496

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079570.1.1	Tomato	nucleus	73.47	60.25
VIT_18s0001g11310.t01	Wine grape	nucleus	39.29	34.07
PGSC0003DMT400034111	Potato	nucleus	32.14	32.47
PGSC0003DMT400026137	Potato	nucleus	37.76	30.83
AT1G47655.1	Thale cress	nucleus	30.61	28.71
CDY20892	Canola	nucleus	29.59	28.16
CDY58082	Canola	nucleus	29.59	28.16
KXG31638	Sorghum	nucleus	33.67	28.09
Zm00001d039482_P001	Maize	nucleus	32.14	27.27
Bra015609.1-P	Field mustard	nucleus	30.61	26.91
CDY17009	Canola	nucleus	31.12	26.52
TraesCS3D01G108600.1	Wheat	nucleus	30.61	26.09
PGSC0003DMT400006421	Potato	nucleus	27.55	25.96
TraesCS3B01G125100.1	Wheat	nucleus	30.1	25.65
PGSC0003DMT400087458	Potato	nucleus	21.43	25.45
TraesCS3A01G106500.1	Wheat	nucleus	30.1	24.79
PGSC0003DMT400064695	Potato	nucleus	28.06	11.83
PGSC0003DMT400003359	Potato	nucleus	29.08	11.7
PGSC0003DMT400047370	Potato	nucleus	26.02	11.54
PGSC0003DMT400050273	Potato	nucleus	27.04	10.54
PGSC0003DMT400083080	Potato	nucleus	24.49	9.76

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1AUB9	PFAM:PD007478
PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400011680	PGSC:PGSC0003DMG400011680	EnsemblPlants:PGSC0003DMT400030496	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF60	UniParc:UPI0002960F6E	InterPro:Znf_Dof	SEG:seg	:

Description

DOF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011680]

Coordinates

chr4:-:68871773..68877111

Molecular Weight (calculated)

21394.3 Da

IEP (calculated)

9.068

GRAVY (calculated)

-0.547

Length

196 amino acids

Sequence
(BLAST)

001: MSSEIGDRRP ARLPAPVNGT RPSEPENLPC PRCDSTNTKF CYYNNYNLSQ PRHFCKSCRR YWTRGGTLRN VPVGGGTRKN SSHKRPRINS STGNVQEHAN
101: PITMMGSESG LGSGSGSMSL MGCEVNLNES VHEGGNGALH SCMQVLAYDR VDLLSSRIDF YPVVQPLSSG AARVGRYHGG LDDPIRTSVL VGYLFI

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.