Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030496 | Potato | nucleus | 60.25 | 73.47 |
| VIT_18s0001g11310.t01 | Wine grape | nucleus | 48.12 | 50.88 |
| Solyc02g065290.1.1 | Tomato | nucleus | 35.15 | 41.38 |
| Solyc02g090220.2.1 | Tomato | nucleus | 43.51 | 40.31 |
| AT1G47655.1 | Thale cress | nucleus | 33.89 | 38.76 |
| CDY20892 | Canola | nucleus | 32.64 | 37.86 |
| CDY58082 | Canola | nucleus | 32.22 | 37.38 |
| Solyc03g121400.1.1 | Tomato | nucleus | 31.8 | 36.19 |
| Bra015609.1-P | Field mustard | nucleus | 33.47 | 35.87 |
| Solyc06g062520.1.1 | Tomato | nucleus | 28.45 | 35.42 |
| KXG31638 | Sorghum | nucleus | 33.89 | 34.47 |
| Zm00001d039482_P001 | Maize | nucleus | 33.05 | 34.2 |
| CDY17009 | Canola | nucleus | 31.8 | 33.04 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 31.38 | 32.61 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 30.96 | 32.17 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 30.54 | 30.67 |
| Solyc02g076850.1.1 | Tomato | nucleus | 18.41 | 26.99 |
| Solyc02g088070.2.1 | Tomato | nucleus | 28.87 | 14.94 |
| Solyc02g067230.2.1 | Tomato | nucleus | 28.87 | 14.78 |
| Solyc05g007880.2.1 | Tomato | nucleus | 26.78 | 14.51 |
| Solyc03g115940.2.1 | Tomato | nucleus | 28.03 | 13.37 |
| Solyc06g069760.2.1 | Tomato | nucleus | 24.27 | 11.79 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:K4BV41 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF60 | EnsemblPlantsGene:Solyc04g079570.1 |
| EnsemblPlants:Solyc04g079570.1.1 | UniParc:UPI00027671B3 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:-:63990535..63991254
Molecular Weight (calculated)
24389.4 Da
IEP (calculated)
6.888
GRAVY (calculated)
-0.534
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSEIGDRRP ARLPAPVNGT RPSEPENLPC PRCDSTNTKF CYYNNYNLSQ PRHFCKSCRR YWTRGGTLRN VPVGGGTRKN SSHKRPRINS GAGTVQEQTN
101: PITMMGSGSG HVSGSGSMSL MGCEVNLNES VHEGGNGTSS FTSLLTAPVG VGVGGFVPLG GFGLGLGGFG LGNLDWPMEQ VSGGGNGGDG GENDKWQLSG
201: GEMEGGGGGG GSGGGGIGGD DDCFGWPDLA ISAPGTSLK
101: PITMMGSGSG HVSGSGSMSL MGCEVNLNES VHEGGNGTSS FTSLLTAPVG VGVGGFVPLG GFGLGLGGFG LGNLDWPMEQ VSGGGNGGDG GENDKWQLSG
201: GEMEGGGGGG GSGGGGIGGD DDCFGWPDLA ISAPGTSLK
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Arabidopsis Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.