Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034111 | Potato | nucleus | 89.16 | 93.3 |
| Solyc02g090220.2.1 | Tomato | nucleus | 62.07 | 48.84 |
| Solyc03g121400.1.1 | Tomato | nucleus | 37.44 | 36.19 |
| Solyc06g062520.1.1 | Tomato | nucleus | 33.5 | 35.42 |
| Solyc04g079570.1.1 | Tomato | nucleus | 41.38 | 35.15 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 32.51 | 28.7 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 31.53 | 27.83 |
| Solyc02g076850.1.1 | Tomato | nucleus | 21.67 | 26.99 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 31.03 | 26.47 |
| KXG31638 | Sorghum | nucleus | 30.05 | 25.96 |
| Zm00001d039482_P001 | Maize | nucleus | 28.57 | 25.11 |
| Solyc03g115940.2.1 | Tomato | nucleus | 32.02 | 12.97 |
| Solyc05g007880.2.1 | Tomato | nucleus | 28.08 | 12.93 |
| Solyc02g088070.2.1 | Tomato | nucleus | 29.06 | 12.77 |
| Solyc02g067230.2.1 | Tomato | nucleus | 28.08 | 12.21 |
| Solyc06g069760.2.1 | Tomato | nucleus | 29.56 | 12.2 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:K4B6W3 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF12 | EnsemblPlantsGene:Solyc02g065290.1 |
| EnsemblPlants:Solyc02g065290.1.1 | UniParc:UPI0002768BDF | InterPro:Znf_Dof | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:-:36449607..36450218
Molecular Weight (calculated)
21891.7 Da
IEP (calculated)
8.952
GRAVY (calculated)
-0.491
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLESSEKLV TKQQTGGVQA PPTQEPDHHL PCPRCDSINT KFCYYNNYNL SQPRHFCKSC RRYWTQGGTL RDIPIGGGSR KNAKRSRIYT NTPFSSTIAS
101: VSSHAVPGNS PFMLPLPAAN QLLFGTDVKP INNFTSLLSS HGPGVLALGG IEDMGFGIGR GNVWPFTGAP DSYSRNYNNG GGAGMWQFSG GEGGFVGSGD
201: YFN
101: VSSHAVPGNS PFMLPLPAAN QLLFGTDVKP INNFTSLLSS HGPGVLALGG IEDMGFGIGR GNVWPFTGAP DSYSRNYNNG GGAGMWQFSG GEGGFVGSGD
201: YFN
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Arabidopsis Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.