Factsheet for Solyc05g007880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005300.2.1
Solyc03g019730.2.1
Solyc06g072080.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39660.1	Solyc01g005300.2.1	AT1G68050.1	16002617
AT5G39660.1	Solyc03g019730.2.1	AT5G50680.1	21798944
AT5G39660.1	Solyc06g072080.2.1	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047370	Potato	nucleus	94.33	94.12
Solyc02g076850.1.1	Tomato	nucleus	16.55	44.79
KRH01188	Soybean	nucleus	50.79	44.71
KRH40083	Soybean	nucleus	49.89	43.74
Solyc02g067230.2.1	Tomato	nucleus	46.03	43.47
Solyc02g088070.2.1	Tomato	nucleus	43.76	41.77
Solyc03g115940.2.1	Tomato	nucleus	44.22	38.92
Bra028437.1-P	Field mustard	nucleus	34.69	38.25
CDX74440	Canola	nucleus	35.83	37.26
CDY37010	Canola	nucleus	32.43	36.67
CDX67434	Canola	nucleus	35.15	36.64
CDY30261	Canola	nucleus	36.28	36.36
Bra025655.1-P	Field mustard	nucleus	36.51	36.18
Solyc06g069760.2.1	Tomato	nucleus	40.14	35.98
GSMUA_Achr11P...	Banana	nucleus	37.64	35.62
AT5G39660.1	Thale cress	nucleus	36.28	35.01
Solyc06g062520.1.1	Tomato	nucleus	12.7	29.17
Solyc03g121400.1.1	Tomato	nucleus	13.38	28.1
Solyc02g065290.1.1	Tomato	nucleus	12.93	28.08
Solyc04g079570.1.1	Tomato	nucleus	14.51	26.78
Solyc02g090220.2.1	Tomato	nucleus	15.42	26.36

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003851	UniProt:K4BWW3
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7
EnsemblPlantsGene:Solyc05g007880.2	EnsemblPlants:Solyc05g007880.2.1	UniParc:UPI000276607D	InterPro:Znf_Dof	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:2319572..2322236

Molecular Weight (calculated)

49071.7 Da

IEP (calculated)

6.570

GRAVY (calculated)

-0.832

Length

441 amino acids

Sequence
(BLAST)

001: MSEVRDPSIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDEKINLEGE VTQSKQVDEL VDPAADSSIE PETSSGISDD IKMQDADKET LSSKSVEEED
101: SSEEKALKKP DKLIPCPRCN SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR VEAAAHGMHL PASRTNGTVL
201: TFGSDKPLCD SMVSALNLAE NSHNMHRNEY HGSEQRMPTI GNDQSNGSCS TASSVTDKES SAGTHDLANW SNFQPFPPQV PYFQGAPWPY SGFPVSFYPA
301: APYWGCTVSN PWNVPWLSSN QSVHNNSPTS PTLGKHSRDE SKLDPSQSRR RDTTLQDREG ERCVLIPKTL RIHDPNEAAK SSIWSTLGIR NEKIDSTRGT
401: MLFSAFNPKA DHRNRELDTS FALQANPAAL SRSLHFREST R

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.