CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41120
KRH41723
KRH59806
KRH60424

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39660.1	KRH41723	AT1G68050.1	16002617
AT5G39660.1	KRH60424	AT1G68050.1	16002617
AT5G39660.1	KRH41120	AT5G50680.1	21798944
AT5G39660.1	KRH59806	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01188	Soybean	nucleus	93.24	93.61
KRH18471	Soybean	nucleus	62.82	64.75
KRG93541	Soybean	nucleus	48.31	63.12
KRH03487	Soybean	nucleus	51.29	54.78
KRH56903	Soybean	nucleus	50.5	53.7
KRH63324	Soybean	nucleus	48.71	52.13
KRH54567	Soybean	nucleus	47.12	51.75
PGSC0003DMT400047370	Potato	nucleus	44.73	50.91
KRH74885	Soybean	nucleus	47.71	50.1
Solyc05g007880.2.1	Tomato	nucleus	43.74	49.89
KRH70746	Soybean	nucleus, plastid	47.12	48.87
KRH42862	Soybean	nucleus	7.55	48.72
KRH50577	Soybean	nucleus	45.13	47.39
KRG89621	Soybean	nucleus	44.14	46.06
KRH21283	Soybean	nucleus	13.32	45.58
KRH58964	Soybean	nucleus	14.71	44.85
Bra028437.1-P	Field mustard	nucleus	35.19	44.25
CDY37010	Canola	nucleus	34.19	44.1
CDX74440	Canola	nucleus	36.98	43.87
KRH11011	Soybean	nucleus	13.32	43.79
CDY30261	Canola	nucleus	37.57	42.95
Bra025655.1-P	Field mustard	nucleus	37.97	42.92
CDX67434	Canola	nucleus	35.98	42.79
AT5G39660.1	Thale cress	nucleus	38.57	42.45
GSMUA_Achr11P...	Banana	nucleus	38.57	41.63
KRG94921	Soybean	nucleus	37.38	38.92
KRH64974	Soybean	nucleus	35.59	38.83
KRH44749	Soybean	nucleus	29.22	33.87
KRH13096	Soybean	nucleus, vacuole	30.02	32.4
KRH09992	Soybean	nucleus	13.32	31.75
KRH47156	Soybean	nucleus	12.92	30.81
KRH70017	Soybean	nucleus	14.31	30.77
KRH23341	Soybean	nucleus	12.92	30.66
KRH44186	Soybean	nucleus	12.92	30.52
KRH08373	Soybean	nucleus	13.32	28.39

Protein Annotations

EntrezGene:100784308	MapMan:15.5.1.5	EMBL:ACUP02006017	EnsemblPlantsGene:GLYMA_09G237000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1L5W6	InterPro:IPR003851	EnsemblPlants:KRH40083	ProteinID:KRH40083	ProteinID:KRH40083.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF1	UniParc:UPI000233846B
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:45910615..45914563

Molecular Weight (calculated)

54676.0 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.866

Length

503 amino acids

Sequence
(BLAST)

001: MSEAKDPAIK LFGKTIPVPE ILPGSNGAPA SSSGDVVVDD SVDASSTNSS RESHTNTDAQ EKDFDKDTLG EKPTDDKKED GAPAQSSEEV ANPDTASGTC
101: EESIIQSTER EATTLKTTKT EEEQGETSNS QDKNLKKPDK ILPCPRCNSM DTKFCYYNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG RRKNKSVASH
201: YRQITVSEAA LQNPRTDLPN GAYHPSLKCN GTVLTFGTDT PLCESMASVL NLADKTMHNY TRNGFHKPEE LRIPVSHASG EKGDDQSNKS SVTSTTSVEG
301: ASTNRPKEQV MQNCQSSPSQ VPYFPGTPWP IPWNPVQWSS PVPPPAFCPP GFTMPFYPAT AYWGCAMPGT WNIPWLAQPS SPNGATPNSG PNSPTLGKHS
401: REDYTFKPNE SGGEDGHSKE NNKEKSLWVP KTLRIDDSGE AAKSSIWATL GIKNDKADSV PGGTLFKAFP SKHDDKNHSM QSSRVLLANP AALSRSLNFH
501: ETS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.