CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74885	Soybean	nucleus	86.6	87.68
KRH50577	Soybean	nucleus	57.11	57.83
KRG89621	Soybean	nucleus	55.26	55.6
KRH42862	Soybean	nucleus	8.87	55.13
KRH01188	Soybean	nucleus	49.9	48.3
GSMUA_Achr5P07660_001	Banana	nucleus	29.9	48.01
KRH03487	Soybean	nucleus	45.98	47.35
KRH56903	Soybean	nucleus	45.98	47.15
KRH40083	Soybean	nucleus	48.87	47.12
GSMUA_Achr9P05020_001	Banana	nucleus	31.55	46.65
KRH58964	Soybean	nucleus	15.46	45.45
KRH54567	Soybean	nucleus	42.89	45.41
KRH63324	Soybean	nucleus	43.09	44.47
KRH21283	Soybean	nucleus	13.4	44.22
KRH11011	Soybean	nucleus	13.81	43.79
CDY01768	Canola	nucleus	31.13	41.03
KRH18471	Soybean	nucleus	41.03	40.78
CDX95919	Canola	nucleus	30.93	40.76
CDY72477	Canola	nucleus	30.31	39.95
Bra004396.1-P	Field mustard	nucleus	30.31	39.95
GSMUA_Achr6P32240_001	Banana	nucleus	31.75	39.59
KRG93541	Soybean	nucleus	30.93	38.96
CDY16193	Canola	nucleus	26.19	38.84
Bra024683.1-P	Field mustard	nucleus	26.19	38.84
AT1G69570.1	Thale cress	nucleus	31.34	38.1
Bra003994.1-P	Field mustard	nucleus	30.31	38.08
CDY07344	Canola	nucleus	30.31	38.08
CDY67869	Canola	nucleus	29.9	37.66
CDY44994	Canola	nucleus	20.41	36.67
GSMUA_Achr11P...	Banana	nucleus	31.55	36.34
CDY50735	Canola	extracellular	26.19	34.89
AT1G26790.1	Thale cress	nucleus, plastid	26.6	34.68
Bra016286.1-P	Field mustard	nucleus	23.3	33.73
CDY46443	Canola	nucleus	23.09	33.43
KRH64974	Soybean	nucleus	31.13	32.75
KRG94921	Soybean	nucleus	32.58	32.71
EES02731	Sorghum	nucleus	37.53	32.5
TraesCS3A01G180600.1	Wheat	nucleus	35.88	32.28
KRH44749	Soybean	nucleus	28.87	32.26
CDY50734	Canola	nucleus	17.94	32.1
TraesCS3B01G210300.1	Wheat	nucleus	35.46	31.91
TraesCS3D01G185500.2	Wheat	nucleus	35.26	31.78
KRH13096	Soybean	nucleus, vacuole	29.28	30.47
Zm00001d040362_P001	Maize	nucleus	35.67	30.24
KRH44186	Soybean	nucleus	13.2	30.05
KRH47156	Soybean	nucleus	12.99	29.86
KRH09992	Soybean	nucleus	12.78	29.38
KRH70017	Soybean	nucleus	14.02	29.06
Os01t0264000-01	Rice	nucleus	29.69	29.03
GSMUA_Achr2P11520_001	Banana	nucleus	27.22	28.39
KRH23341	Soybean	nucleus	12.37	28.3
KRH08373	Soybean	nucleus	13.2	27.12

Protein Annotations

EntrezGene:100788246	MapMan:15.5.1.5	EMBL:ACUP02000792	EnsemblPlantsGene:GLYMA_02G108600	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:K7K7M1	EnsemblPlants:KRH70746	ProteinID:KRH70746	ProteinID:KRH70746.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	UniParc:UPI0002337883	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:10381776..10385697

Molecular Weight (calculated)

53029.7 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.904

Length

485 amino acids

Sequence
(BLAST)

001: MSEVVTKDSA IKLFGRTISL SRNNNNNNNN NEVSSSANGF SSDEPAPPED SSSSFPREVS STTEHEAGRD KEPSRKELTS AQEEDEEASH QTIEEPKSPT
101: SSSCNLENPK TPSTERETSI LKSSKNGDQS DATTTSPSQD KTLKKPDKVL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR
201: KNKNTPSSLS HFRQIMVPEG LQNGSLHGAA VLTFGSDPPL CDSMASVLSL AEKTTQNGFH SPNGDEYYDT VMASTLSERR DNATTSTNSR QESLDNHKSY
301: HHHHHHHHHQ GFTPQLCFPG SSSSPWPYPS NNPIMTPSAF CHPVPFYPTQ AFWGSMPPPS WSVNYQSAPG SGPNSPTLGK HSRDGDILFS TDMAANNNNN
401: TVLIPKTLRI DDPTEAAKSS IWSTLGIKNE KGNSLNGGGL FKAFASKGNS DDKKNHAVMV EASPSPVLQA NPAALSRSLV FHERT

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.