Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P05020_001 | Banana | nucleus | 67.22 | 61.89 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 17.22 | 43.7 |
| GSMUA_Achr11P... | Banana | nucleus | 60.6 | 43.47 |
| GSMUA_Achr6P10720_001 | Banana | nucleus | 37.75 | 41.76 |
| GSMUA_Achr11P... | Banana | nucleus | 33.44 | 41.74 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 51.99 | 40.36 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 19.54 | 39.6 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 19.21 | 38.41 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 18.54 | 36.36 |
| GSMUA_Achr2P22000_001 | Banana | nucleus | 42.72 | 34.13 |
| GSMUA_Achr10P... | Banana | nucleus | 39.74 | 33.61 |
| GSMUA_Achr11P... | Banana | nucleus | 50.0 | 32.4 |
| GSMUA_Achr3P01850_001 | Banana | nucleus | 37.09 | 32.37 |
| KRH74885 | Soybean | nucleus | 48.68 | 30.69 |
| KRH70746 | Soybean | nucleus, plastid | 48.01 | 29.9 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 45.36 | 29.46 |
| CDY16193 | Canola | nucleus | 31.79 | 29.36 |
| Bra024683.1-P | Field mustard | nucleus | 31.79 | 29.36 |
| KRH50577 | Soybean | nucleus | 46.03 | 29.02 |
| KRG89621 | Soybean | nucleus | 46.03 | 28.84 |
| CDX95919 | Canola | nucleus | 35.1 | 28.8 |
| CDY01768 | Canola | nucleus | 34.77 | 28.53 |
| CDY67869 | Canola | nucleus | 36.09 | 28.31 |
| AT1G69570.1 | Thale cress | nucleus | 36.76 | 27.82 |
| CDY72477 | Canola | nucleus | 33.77 | 27.72 |
| Bra004396.1-P | Field mustard | nucleus | 33.77 | 27.72 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 34.11 | 27.69 |
| CDY07344 | Canola | nucleus | 35.1 | 27.46 |
| Bra003994.1-P | Field mustard | nucleus | 35.1 | 27.46 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 17.22 | 26.53 |
| CDY50735 | Canola | extracellular | 31.46 | 26.1 |
| Bra016286.1-P | Field mustard | nucleus | 27.81 | 25.07 |
| CDY46443 | Canola | nucleus | 27.81 | 25.07 |
| GSMUA_Achr10P... | Banana | nucleus | 18.87 | 25.0 |
| CDY44994 | Canola | nucleus | 22.19 | 24.81 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 18.21 | 24.55 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 17.88 | 23.28 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 17.88 | 23.08 |
| CDY50734 | Canola | nucleus | 19.21 | 21.4 |
| GSMUA_Achr6P29500_001 | Banana | nucleus | 14.9 | 18.83 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G07660_001 | EnsemblPlants:GSMUA_Achr5P07660_001 | EnsemblPlants:GSMUA_Achr5T07660_001 |
| InterPro:IPR003851 | UniProt:M0SWJ5 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31089 | PANTHER:PTHR31089:SF15 | UniParc:UPI0002955A18 | InterPro:Znf_Dof | SEG:seg | : |
Description
Putative Dof zinc finger protein DOF5.5 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07660_001]
Coordinates
chr5:-:5496748..5500192
Molecular Weight (calculated)
32931.5 Da
IEP (calculated)
7.337
GRAVY (calculated)
-0.665
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAKDPAIK LFGRTIPLPE SLPPPPEEEA EQTAIPDATP ATEADDGDPV LRKPDKILPC PRCNSMDTKF CYYNNYNINQ PRHFCKNCQR YWTAGGTTRN
101: VPVGAGRRKS KHSASQVRQI ISILYGENEG PSCASSVNGS NFVENGLAGN PTQIEQNGMQ GYCNGVTTMP QFSCYPVAPW AYPWSPGWTN VAPIVRCSPE
201: FVQRPENGNG SPTLGKHSRD ATLQGEEKTG KSLWVPKTLR IDDPDEAAKS SIWATLGIKP EVGIFEPLKS KAESKARTSD AAHLLQANPA ALSRSHSFQE
301: ST
101: VPVGAGRRKS KHSASQVRQI ISILYGENEG PSCASSVNGS NFVENGLAGN PTQIEQNGMQ GYCNGVTTMP QFSCYPVAPW AYPWSPGWTN VAPIVRCSPE
201: FVQRPENGNG SPTLGKHSRD ATLQGEEKTG KSLWVPKTLR IDDPDEAAKS SIWATLGIKP EVGIFEPLKS KAESKARTSD AAHLLQANPA ALSRSHSFQE
301: ST
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Arabidopsis Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.