Factsheet for GSMUA_Achr3P01850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22000_001	Banana	nucleus	63.87	58.47
GSMUA_Achr6P10720_001	Banana	nucleus	45.38	57.51
GSMUA_Achr11P...	Banana	nucleus	35.55	50.83
GSMUA_Achr10P...	Banana	nucleus	48.27	46.78
GSMUA_Achr2P09110_001	Banana	nucleus	15.61	45.38
GSMUA_Achr4P15140_001	Banana	nucleus	18.5	42.95
GSMUA_Achr4P08020_001	Banana	nucleus	17.92	41.06
GSMUA_Achr9P05020_001	Banana	nucleus	35.84	37.8
GSMUA_Achr5P07660_001	Banana	nucleus	32.37	37.09
GSMUA_Achr9P06430_001	Banana	nucleus	15.61	35.06
GSMUA_Achr6P32240_001	Banana	nucleus	35.84	31.88
GSMUA_Achr11P...	Banana	nucleus	37.28	30.64
GSMUA_Achr11P...	Banana	nucleus	38.44	28.54
GSMUA_Achr7P09590_001	Banana	nucleus	14.74	26.02
GSMUA_Achr2P13350_001	Banana	nucleus	16.18	24.14
GSMUA_Achr2P15700_001	Banana	nucleus	15.32	23.66
GSMUA_Achr10P...	Banana	nucleus	15.32	23.25
GSMUA_Achr4P30860_001	Banana	nucleus	14.74	21.79
GSMUA_Achr2P11520_001	Banana	nucleus	28.61	21.29
GSMUA_Achr6P29500_001	Banana	nucleus	13.58	19.67

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G01850_001	EnsemblPlants:GSMUA_Achr3P01850_001	EnsemblPlants:GSMUA_Achr3T01850_001
InterPro:IPR003851	UniProt:M0SB03	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	UniParc:UPI0002963574	InterPro:Znf_Dof	SEG:seg	:	:

Description

Putative Dof zinc finger protein DOF5.5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01850_001]

Coordinates

chr3:+:1251559..1252883

Molecular Weight (calculated)

37845.9 Da

IEP (calculated)

7.476

GRAVY (calculated)

-0.729

Length

346 amino acids

Sequence
(BLAST)

001: MSENRESAIK LFGMTIPLQL TSSGDDDEDV DKEDATATSQ EPESQDKNES ATCSSEIHKP VSADQEDASS TKNPTKTAAE GVKKTEKILP CPRCRSLDTK
101: FCYYNNYNIN QPRHFCRNCQ RYWTAGGTMR NVPVGAGRRK SKHSSHCRLQ ALRPDTHEPV HYTSLRPNGT VLSFGTDAPV AEKANGCNKN SGDELQQENE
201: GSTAPVPCFS GSPWPYLWAP APPLCASTFP VAFYPAAAYW SWSIPWPSSL PPSSPNYRGL GSSSTASGKH SRDASMIESS IHKTPRRIDD PEEAAKSSKI
301: DAVSNGGLLK AFQPKLYVKN QVLETPLLVH ANPAALSRSL HFQETS

Best Arabidopsis Sequence Match ( AT3G47500.1 )
(BLAST)

001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI

Arabidopsis Description

CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.