Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P05020_001 | Banana | nucleus | 49.87 | 59.15 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 40.36 | 51.99 |
| GSMUA_Achr11P... | Banana | nucleus | 51.16 | 47.27 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 14.4 | 47.06 |
| GSMUA_Achr11P... | Banana | nucleus | 29.05 | 46.69 |
| GSMUA_Achr6P10720_001 | Banana | nucleus | 31.88 | 45.42 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 16.2 | 42.28 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 15.68 | 40.4 |
| GSMUA_Achr10P... | Banana | nucleus | 34.96 | 38.1 |
| GSMUA_Achr2P22000_001 | Banana | nucleus | 35.99 | 37.04 |
| GSMUA_Achr11P... | Banana | nucleus | 43.44 | 36.27 |
| GSMUA_Achr3P01850_001 | Banana | nucleus | 31.88 | 35.84 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 14.14 | 35.71 |
| KRH74885 | Soybean | nucleus | 39.33 | 31.94 |
| KRH50577 | Soybean | nucleus | 39.33 | 31.94 |
| CDX95919 | Canola | nucleus | 30.08 | 31.79 |
| KRH70746 | Soybean | nucleus, plastid | 39.59 | 31.75 |
| KRG89621 | Soybean | nucleus | 39.07 | 31.54 |
| CDY16193 | Canola | nucleus | 26.48 | 31.5 |
| Bra024683.1-P | Field mustard | nucleus | 26.48 | 31.5 |
| CDY01768 | Canola | nucleus | 29.56 | 31.25 |
| CDY72477 | Canola | nucleus | 29.31 | 30.98 |
| Bra004396.1-P | Field mustard | nucleus | 29.31 | 30.98 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 36.5 | 30.54 |
| CDY44994 | Canola | nucleus | 20.82 | 30.0 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 14.65 | 29.08 |
| AT1G69570.1 | Thale cress | nucleus | 29.82 | 29.07 |
| Bra003994.1-P | Field mustard | nucleus | 28.79 | 29.02 |
| CDY07344 | Canola | nucleus | 28.79 | 29.02 |
| CDY67869 | Canola | nucleus | 28.53 | 28.83 |
| Bra016286.1-P | Field mustard | nucleus | 24.68 | 28.66 |
| CDY46443 | Canola | nucleus | 24.68 | 28.66 |
| CDY50735 | Canola | extracellular | 26.22 | 28.02 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 26.48 | 27.69 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 15.42 | 26.79 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 15.94 | 26.72 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 15.94 | 26.5 |
| GSMUA_Achr10P... | Banana | nucleus | 15.42 | 26.32 |
| CDY50734 | Canola | nucleus | 16.97 | 24.35 |
| GSMUA_Achr6P29500_001 | Banana | nucleus | 12.6 | 20.5 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G32240_001 | EnsemblPlants:GSMUA_Achr6P32240_001 | EnsemblPlants:GSMUA_Achr6T32240_001 |
| InterPro:IPR003851 | UniProt:M0TC18 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31089 | UniParc:UPI000295B1F5 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
Putative Dof zinc finger protein DOF5.2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G32240_001]
Coordinates
chr6:+:31722925..31727285
Molecular Weight (calculated)
41971.0 Da
IEP (calculated)
5.085
GRAVY (calculated)
-0.501
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEAKDPAIK LFGTTIPVVA SSPTRIADAE DSEVEAADTE PVVSAAEGQK MAIIFQDASE GVTNVEVDNV LATETDEEDE GAPISSSGLT SSHKDEVNKT
101: SIADEKIAEK GKSEDTKTET DCSTQEKVLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKSKH SVALQSLPCV
201: PTSPAGPLIG NGTVLRFGQE VPLCESVASV LGIRGEQAHS CRPENGDWRS VPWGAGAVMA ATLPFPLMAA PFWGFTAWPN GTWNVSSTSN RGCSGNDSPT
301: LGKHSRDSNL ESEAETMEKS LWVPKTLRID DPEEAAKSSI WTALGIKPDM GGIIFQSKAE KRANKSDVAR ILHANPAALS RFESFQEST
101: SIADEKIAEK GKSEDTKTET DCSTQEKVLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKSKH SVALQSLPCV
201: PTSPAGPLIG NGTVLRFGQE VPLCESVASV LGIRGEQAHS CRPENGDWRS VPWGAGAVMA ATLPFPLMAA PFWGFTAWPN GTWNVSSTSN RGCSGNDSPT
301: LGKHSRDSNL ESEAETMEKS LWVPKTLRID DPEEAAKSSI WTALGIKPDM GGIIFQSKAE KRANKSDVAR ILHANPAALS RFESFQEST
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
Arabidopsis Description
CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.