Factsheet for GSMUA_Achr6P29500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G590700.1	Wheat	nucleus	25.94	30.85
TraesCS2B01G592600.1	Wheat	nucleus	23.85	30.65
TraesCS2B01G592900.1	Wheat	nucleus	25.94	29.95
HORVU2Hr1G119110.3	Barley	nucleus	26.36	29.58
TraesCS2D01G563400.1	Wheat	nucleus	25.1	28.99
TraesCS2B01G592800.1	Wheat	nucleus, plastid	25.52	28.77
GSMUA_Achr2P09110_001	Banana	nucleus	14.23	28.57
TraesCS2A01G591100.1	Wheat	nucleus, plastid	25.1	28.44
TraesCS2A01G590800.1	Wheat	plastid	25.94	28.31
Os04t0678400-01	Rice	plastid	23.85	27.67
TraesCS2D01G563000.1	Wheat	nucleus, plastid	25.1	27.65
TraesCS2A01G591200.1	Wheat	nucleus, plastid	24.69	27.57
GSMUA_Achr4P15140_001	Banana	nucleus	17.15	27.52
HORVU2Hr1G119160.3	Barley	nucleus, plastid	23.85	27.4
TraesCS2D01G563200.1	Wheat	plastid	25.1	27.15
TraesCS2B01G592700.1	Wheat	nucleus	24.69	26.58
GSMUA_Achr4P08020_001	Banana	nucleus	16.74	26.49
Zm00001d026628_P001	Maize	nucleus, plastid	23.01	26.07
GSMUA_Achr7P09590_001	Banana	nucleus	21.34	26.02
TraesCS2D01G563100.1	Wheat	nucleus	24.27	25.78
GSMUA_Achr2P13350_001	Banana	nucleus	24.27	25.0
GSMUA_Achr10P...	Banana	nucleus	23.85	25.0
GSMUA_Achr2P15700_001	Banana	nucleus	23.01	24.55
GSMUA_Achr4P30860_001	Banana	nucleus	23.85	24.36
Zm00001d001824_P001	Maize	nucleus	20.5	24.02
TraesCS2A01G591000.1	Wheat	mitochondrion, nucleus	24.27	23.29
EES13107	Sorghum	nucleus	20.92	22.32
GSMUA_Achr9P06430_001	Banana	nucleus	14.23	22.08
GSMUA_Achr11P...	Banana	nucleus	17.57	17.36
GSMUA_Achr6P10720_001	Banana	nucleus	18.41	16.12
GSMUA_Achr5P07660_001	Banana	nucleus	18.83	14.9
GSMUA_Achr9P05020_001	Banana	nucleus	19.67	14.33
GSMUA_Achr2P22000_001	Banana	nucleus	22.59	14.29
GSMUA_Achr3P01850_001	Banana	nucleus	19.67	13.58
GSMUA_Achr10P...	Banana	nucleus	20.08	13.45
GSMUA_Achr6P32240_001	Banana	nucleus	20.5	12.6
GSMUA_Achr11P...	Banana	nucleus	19.67	11.16
GSMUA_Achr11P...	Banana	nucleus	20.08	10.3
GSMUA_Achr2P11520_001	Banana	nucleus	16.74	8.6

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G29500_001	EnsemblPlants:GSMUA_Achr6P29500_001	EnsemblPlants:GSMUA_Achr6T29500_001
InterPro:IPR003851	UniProt:M0TB95	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	UniParc:UPI000296E2F1	InterPro:Znf_Dof	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G29500_001]

Coordinates

chr6:-:29732250..29732969

Molecular Weight (calculated)

25485.9 Da

IEP (calculated)

9.712

GRAVY (calculated)

-0.591

Length

239 amino acids

Sequence
(BLAST)

001: MEQQQQLQKR QRSQQPPLVP CARCGSSDTK FCYFNNYNTS QPRYYCRTCK RHWTHGGTLR NVPEGGSSKK SKLKSSASSS SSPSLKLPQA QAMVDQMAAV
101: AVGTSTNPDR AAMPPPLLYG GGARAAGWGG ILGDEPALPA FNSGGLDGDF GPSNPATTPS GFNLLQQLVQ QPRLTLALHR NLFMFQQQMN APAFATAAPA
201: IVAADAAATT EESNQNYHNN SRMSNMSGAP HPPPSSSSM

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.