Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P09110_001 | Banana | nucleus | 48.05 | 62.18 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 51.3 | 53.02 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 50.0 | 50.99 |
| HORVU3Hr1G072970.1 | Barley | nucleus | 48.7 | 37.13 |
| TraesCS3D01G295100.1 | Wheat | nucleus | 48.05 | 37.0 |
| TraesCS3A01G306800.1 | Wheat | nucleus | 48.05 | 36.63 |
| TraesCS3B01G329700.1 | Wheat | nucleus | 48.05 | 36.27 |
| Os01t0758200-01 | Rice | nucleus | 48.05 | 35.07 |
| Zm00001d012703_P001 | Maize | nucleus | 44.16 | 30.49 |
| TraesCS1A01G334100.1 | Wheat | nucleus, plastid | 40.26 | 29.67 |
| TraesCS1B01G347400.1 | Wheat | plastid | 40.26 | 29.67 |
| OQU78298 | Sorghum | mitochondrion, nucleus, plastid | 40.91 | 29.17 |
| TraesCS1D01G336600.1 | Wheat | nucleus, plastid | 40.26 | 28.97 |
| Zm00001d010740_P001 | Maize | nucleus | 39.61 | 28.77 |
| HORVU1Hr1G076800.1 | Barley | nucleus | 40.91 | 27.04 |
| Zm00001d043402_P001 | Maize | nucleus | 45.45 | 26.92 |
| Zm00001d038693_P001 | Maize | nucleus | 40.26 | 26.84 |
| KXG33408 | Sorghum | nucleus | 44.81 | 26.54 |
| GSMUA_Achr11P... | Banana | nucleus | 35.71 | 22.73 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 26.62 | 20.92 |
| GSMUA_Achr6P10720_001 | Banana | nucleus | 35.06 | 19.78 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 36.36 | 18.54 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 27.27 | 18.1 |
| GSMUA_Achr10P... | Banana | nucleus | 26.62 | 17.98 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 25.97 | 17.86 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 37.66 | 17.68 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 25.32 | 16.67 |
| GSMUA_Achr2P22000_001 | Banana | nucleus | 38.31 | 15.61 |
| GSMUA_Achr3P01850_001 | Banana | nucleus | 35.06 | 15.61 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 15.41 |
| GSMUA_Achr6P29500_001 | Banana | nucleus | 22.08 | 14.23 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 35.71 | 14.14 |
| GSMUA_Achr11P... | Banana | nucleus | 38.31 | 14.01 |
| GSMUA_Achr11P... | Banana | nucleus | 35.06 | 11.59 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 31.17 | 10.32 |
Protein Annotations
| MapMan:15.5.1.5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G06430_001 | EnsemblPlants:GSMUA_Achr9P06430_001 |
| EnsemblPlants:GSMUA_Achr9T06430_001 | InterPro:IPR003851 | UniProt:M0TY02 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31089 | UniParc:UPI000296A800 | InterPro:Znf_Dof | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G06430_001]
Coordinates
chr9:+:4105053..4105517
Molecular Weight (calculated)
16905.1 Da
IEP (calculated)
9.653
GRAVY (calculated)
-0.514
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVEEAVSF KLFGTVIQKG DRQAKEEEEK RVEAQEEAAA LSCPRCKSKE TRFCYFNNYN VNQPRHFCKA CHRYWTAGGT LRRNVPVGAG RRRGRPAHRI
101: GASSAAAATA VIPSVCVLVC QPSGYSDGAA AMDRWLLTPD APAIVDRRHS GGPR
101: GASSAAAATA VIPSVCVLVC QPSGYSDGAA AMDRWLLTPD APAIVDRRHS GGPR
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.