Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G334100.1 | Wheat | nucleus, plastid | 97.13 | 97.13 |
| TraesCS1D01G336600.1 | Wheat | nucleus, plastid | 94.74 | 92.52 |
| HORVU1Hr1G076800.1 | Barley | nucleus | 91.39 | 81.97 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 30.62 | 53.78 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 37.8 | 53.02 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 37.8 | 52.32 |
| OQU78298 | Sorghum | mitochondrion, nucleus, plastid | 50.72 | 49.07 |
| Zm00001d010740_P001 | Maize | nucleus | 49.28 | 48.58 |
| Zm00001d038693_P001 | Maize | nucleus | 49.76 | 45.02 |
| TraesCS3B01G329700.1 | Wheat | nucleus | 41.15 | 42.16 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 29.67 | 40.26 |
| TraesCS3B01G305400.1 | Wheat | nucleus | 22.97 | 31.17 |
| TraesCS2B01G592600.1 | Wheat | nucleus | 22.01 | 24.73 |
| TraesCS2B01G592900.1 | Wheat | nucleus | 22.01 | 22.22 |
| TraesCS2B01G592800.1 | Wheat | nucleus, plastid | 22.01 | 21.7 |
| TraesCS2B01G592700.1 | Wheat | nucleus | 22.49 | 21.17 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 22.97 | 20.87 |
| TraesCS4B01G081500.1 | Wheat | nucleus | 22.97 | 18.11 |
| TraesCS4B01G286400.1 | Wheat | nucleus | 32.54 | 15.7 |
| TraesCS5B01G249800.1 | Wheat | nucleus | 20.57 | 15.3 |
| TraesCS3B01G210300.1 | Wheat | nucleus | 32.54 | 12.62 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 28.71 | 12.53 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G347400.1 | EnsemblPlantsGene:TraesCS1B01G347400 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003851 | InterPro:Znf_Dof | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF16 | PFAM:PD007478 | PFAM:PF02701 |
| PFscan:PS50884 | ScanProsite:PS01361 | SEG:seg | MapMan:15.5.1.5 | : | : |
Description
No Description!
Coordinates
chr1B:+:576521456..576522540
Molecular Weight (calculated)
22272.2 Da
IEP (calculated)
9.771
GRAVY (calculated)
-0.476
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGAAGIKLF GKVITRQPTR TGADGGGGVV VSKTQQAAPM SSSSSSSSGR GSAEQLEEAA RARAAAAEAR LPCPRCRSED TKFCYFNNYN VNQPRHFCRA
101: CHRYWTAGGA IRNVPVGSGR RKNRPVLHGA STVMSVADHH LAGPASPGMP NGLGFHPDHG WSQVVPSPAY LGNAEMEQCW WLVHQYPAQG QVNGDVQLSP
201: SSLRINQYA
101: CHRYWTAGGA IRNVPVGSGR RKNRPVLHGA STVMSVADHH LAGPASPGMP NGLGFHPDHG WSQVVPSPAY LGNAEMEQCW WLVHQYPAQG QVNGDVQLSP
201: SSLRINQYA
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.