Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26889012
|
gfp PMID:
26889012
doi
State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China College of Agriculture, GuangXi University, Nanning 530004, PR China., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China wjlu@scau.edu.cn., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P09110_001 | Banana | nucleus | 22.73 | 46.22 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 25.62 | 41.06 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 25.21 | 40.94 |
| GSMUA_Achr6P10720_001 | Banana | nucleus | 44.21 | 39.19 |
| GSMUA_Achr10P... | Banana | nucleus | 53.72 | 36.41 |
| GSMUA_Achr2P22000_001 | Banana | nucleus | 56.61 | 36.24 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 48.76 | 35.98 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 22.73 | 35.71 |
| GSMUA_Achr3P01850_001 | Banana | nucleus | 50.83 | 35.55 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 41.74 | 33.44 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 46.69 | 29.05 |
| GSMUA_Achr11P... | Banana | nucleus | 49.59 | 28.5 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 20.25 | 25.0 |
| GSMUA_Achr11P... | Banana | nucleus | 45.45 | 23.61 |
| GSMUA_Achr10P... | Banana | nucleus | 21.9 | 23.25 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 21.49 | 23.21 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 21.49 | 22.22 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 19.42 | 20.26 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 36.36 | 18.92 |
| GSMUA_Achr6P29500_001 | Banana | nucleus | 17.36 | 17.57 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr11G09150_001 | EnsemblPlants:GSMUA_Achr11P09150_001 | EnsemblPlants:GSMUA_Achr11T09150_001 |
| InterPro:IPR003851 | UniProt:M0RQP5 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31089 | UniParc:UPI000296E101 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
Putative Dof zinc finger protein DOF5.5 [Source:GMGC_GENE;Acc:GSMUA_Achr11G09150_001]
Coordinates
chr11:+:7071572..7072496
Molecular Weight (calculated)
26755.4 Da
IEP (calculated)
9.804
GRAVY (calculated)
-0.737
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSELGDAAIK LFGKIITLQN STPEERPSDA GGWKEKAARK PEKILPCPRC RSSDTKFCYY NNYNVNQPRH FCRNCQRYWT AGGAMRNVPV GAGRRKNRNT
101: SHDRHVVLRF GSEAAGNIGD EQSSKESEGT ASVPVPFYPA VAEWSCTVPP GAWSTPWLSP VESSSPESSS PTIRKRSRMD DPEEAARSSV LKAFQRKVDV
201: KDHGMEAPLL LHVNPAALSR SLSFQESSKR SAAVGERRSG LY
101: SHDRHVVLRF GSEAAGNIGD EQSSKESEGT ASVPVPFYPA VAEWSCTVPP GAWSTPWLSP VESSSPESSS PTIRKRSRMD DPEEAARSSV LKAFQRKVDV
201: KDHGMEAPLL LHVNPAALSR SLSFQESSKR SAAVGERRSG LY
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Arabidopsis Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.