Factsheet for GSMUA_Achr6P10720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22000_001	Banana	nucleus	64.47	46.56
GSMUA_Achr3P01850_001	Banana	nucleus	57.51	45.38
GSMUA_Achr2P09110_001	Banana	nucleus	19.41	44.54
GSMUA_Achr11P...	Banana	nucleus	39.19	44.21
GSMUA_Achr4P15140_001	Banana	nucleus	21.98	40.27
GSMUA_Achr10P...	Banana	nucleus	51.28	39.22
GSMUA_Achr4P08020_001	Banana	nucleus	21.25	38.41
GSMUA_Achr5P07660_001	Banana	nucleus	41.76	37.75
GSMUA_Achr9P05020_001	Banana	nucleus	43.96	36.59
GSMUA_Achr9P06430_001	Banana	nucleus	19.78	35.06
GSMUA_Achr6P32240_001	Banana	nucleus	45.42	31.88
GSMUA_Achr11P...	Banana	nucleus	42.86	27.79
GSMUA_Achr11P...	Banana	nucleus	45.05	26.39
GSMUA_Achr7P09590_001	Banana	nucleus	18.32	25.51
GSMUA_Achr2P13350_001	Banana	nucleus	20.15	23.71
GSMUA_Achr2P15700_001	Banana	nucleus	19.41	23.66
GSMUA_Achr10P...	Banana	nucleus	19.41	23.25
GSMUA_Achr4P30860_001	Banana	nucleus	19.41	22.65
GSMUA_Achr2P11520_001	Banana	nucleus	32.97	19.35
GSMUA_Achr6P29500_001	Banana	nucleus	16.12	18.41

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G10720_001	EnsemblPlants:GSMUA_Achr6P10720_001	EnsemblPlants:GSMUA_Achr6T10720_001
InterPro:IPR003851	UniProt:M0T5X1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI000295C76B	InterPro:Znf_Dof	:	:

Description

Putative Dof zinc finger protein DOF5.5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10720_001]

Coordinates

chr6:+:7136799..7138350

Molecular Weight (calculated)

30109.6 Da

IEP (calculated)

10.256

GRAVY (calculated)

-0.821

Length

273 amino acids

Sequence
(BLAST)

001: MSENRDSPTA ATIKLFGKTI TLQQKTTPLE QQPDDARSSR KKPDKILPCP RCKSLDTKFC YYNNYNVNQP RHFCKHCQRY WTAGGTMRNV PVGAGRRKSK
101: KGAWHQRRLP EFESVLQTLH HPSLKPNGTV LSFGSDSAPR PAEKTTSCNK NGVRDNSGRP SEASPVPCFK SSSPALDEHS REGHMVKNGS LQKEDSILVP
201: RTMRIDDPEE AAKSCIWTMV GIKSSKNSAI GSGGLLGYFQ PKGDIKNRAG EAASLLHANP AALSRSLNFQ ETS

Best Arabidopsis Sequence Match ( AT5G62430.1 )
(BLAST)

001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM

Arabidopsis Description

CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.