Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P09590_001 | Banana | nucleus | 58.97 | 70.41 |
| GSMUA_Achr10P... | Banana | nucleus | 64.96 | 66.67 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 62.82 | 65.62 |
| KRH47156 | Soybean | nucleus | 42.73 | 47.39 |
| KRH44186 | Soybean | nucleus | 41.88 | 46.01 |
| VIT_09s0002g02490.t01 | Wine grape | nucleus | 42.31 | 45.83 |
| Solyc06g062520.1.1 | Tomato | nucleus | 37.61 | 45.83 |
| Solyc03g121400.1.1 | Tomato | nucleus | 40.17 | 44.76 |
| PGSC0003DMT400006421 | Potato | nucleus | 39.74 | 44.71 |
| KRH09992 | Soybean | nucleus | 39.32 | 43.6 |
| CDY56923 | Canola | nucleus | 34.62 | 43.55 |
| Bra031269.1-P | Field mustard | nucleus | 35.04 | 42.93 |
| CDY51457 | Canola | nucleus | 35.04 | 42.93 |
| CDY69021 | Canola | nucleus | 34.62 | 41.12 |
| KRH23341 | Soybean | nucleus | 37.18 | 41.04 |
| Bra023888.1-P | Field mustard | nucleus | 35.04 | 41.0 |
| AT1G51700.1 | Thale cress | nucleus | 33.76 | 40.72 |
| CDY37299 | Canola | nucleus | 34.62 | 40.5 |
| Bra001822.1-P | Field mustard | nucleus | 35.47 | 40.49 |
| CDY48879 | Canola | nucleus | 35.47 | 40.29 |
| CDY32420 | Canola | nucleus | 35.47 | 40.29 |
| AT3G21270.1 | Thale cress | nucleus | 35.04 | 40.2 |
| CDY52953 | Canola | nucleus | 32.48 | 39.18 |
| CDY46544 | Canola | nucleus | 32.91 | 38.5 |
| Bra014297.1-P | Field mustard | nucleus | 32.48 | 38.0 |
| CDX87836 | Canola | nucleus | 29.49 | 37.91 |
| CDY43923 | Canola | nucleus | 26.07 | 37.89 |
| Bra030423.1-P | Field mustard | nucleus | 29.49 | 37.3 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 17.09 | 33.61 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 29.49 | 29.74 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 18.38 | 28.86 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 17.52 | 27.15 |
| CDX69349 | Canola | nucleus, plastid | 26.92 | 26.03 |
| CDX75689 | Canola | nucleus, plastid | 26.92 | 26.03 |
| Bra011800.1-P | Field mustard | nucleus, plastid | 26.92 | 26.03 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 16.67 | 25.32 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 26.07 | 24.8 |
| GSMUA_Achr6P29500_001 | Banana | nucleus | 24.36 | 23.85 |
| GSMUA_Achr11P... | Banana | nucleus | 22.22 | 21.49 |
| GSMUA_Achr6P10720_001 | Banana | nucleus | 22.65 | 19.41 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 25.64 | 18.29 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 23.08 | 17.88 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 26.5 | 15.94 |
| GSMUA_Achr2P22000_001 | Banana | nucleus | 24.79 | 15.34 |
| GSMUA_Achr10P... | Banana | nucleus | 22.65 | 14.85 |
| GSMUA_Achr3P01850_001 | Banana | nucleus | 21.79 | 14.74 |
| GSMUA_Achr11P... | Banana | nucleus | 26.5 | 14.73 |
| GSMUA_Achr11P... | Banana | nucleus | 25.21 | 12.66 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 20.51 | 10.32 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G30860_001 | EnsemblPlants:GSMUA_Achr4P30860_001 | EnsemblPlants:GSMUA_Achr4T30860_001 |
| InterPro:IPR003851 | UniProt:M0STJ8 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31992 | PANTHER:PTHR31992:SF23 | UniParc:UPI000296CA6C | InterPro:Znf_Dof | SEG:seg | : |
Description
Putative F-box family protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G30860_001]
Coordinates
chr4:-:28268327..28269531
Molecular Weight (calculated)
25706.1 Da
IEP (calculated)
8.742
GRAVY (calculated)
-0.725
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISGATPEP AVLYIPSHQT TMHTDRERRT REPKQNLRCP RCESTNTKFC YYNNYNLSQP RHFCKNCRRY WTKGGALRNI PVGGSTRKNS KRFNASSSSS
101: AGCSIKRSNP PTPLPRLPDL PKPEPFSVLY PPLDPDRHLL DMAGSFSSLL SSDGHLETFL GSIHPAGGGC ATSLPSSSSV NRRSVRVQGT ESPSPAGDMS
201: TPAVENVERL ETDSECWSAG WTDLAIYNPG SSMQ
101: AGCSIKRSNP PTPLPRLPDL PKPEPFSVLY PPLDPDRHLL DMAGSFSSLL SSDGHLETFL GSIHPAGGGC ATSLPSSSSV NRRSVRVQGT ESPSPAGDMS
201: TPAVENVERL ETDSECWSAG WTDLAIYNPG SSMQ
001: MQDPAAYYQT MMAKQQQQQQ PQFAEQEQLK CPRCDSPNTK FCYYNNYNLS QPRHFCKSCR RYWTKGGALR NVPVGGGSRK NATKRSTSSS SSASSPSNSS
101: QNKKTKNPDP DPDPRNSQKP DLDPTRMLYG FPIGDQDVKG MEIGGSFSSL LANNMQLGLG GGGIMLDGSG WDHPGMGLGL RRTEPGNNNN NPWTDLAMNR
201: AEKN
101: QNKKTKNPDP DPDPRNSQKP DLDPTRMLYG FPIGDQDVKG MEIGGSFSSL LANNMQLGLG GGGIMLDGSG WDHPGMGLGL RRTEPGNNNN NPWTDLAMNR
201: AEKN
Arabidopsis Description
DOF3.1DOF2 [Source:UniProtKB/TrEMBL;Acc:A0A178VA07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.