Factsheet for GSMUA_Achr10P18770_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	36.41	53.72
GSMUA_Achr6P10720_001	Banana	nucleus	39.22	51.28
GSMUA_Achr3P01850_001	Banana	nucleus	46.78	48.27
GSMUA_Achr2P22000_001	Banana	nucleus	50.42	47.62
GSMUA_Achr2P09110_001	Banana	nucleus	14.01	42.02
GSMUA_Achr9P05020_001	Banana	nucleus	38.38	41.77
GSMUA_Achr4P08020_001	Banana	nucleus	17.09	40.4
GSMUA_Achr4P15140_001	Banana	nucleus	16.81	40.27
GSMUA_Achr5P07660_001	Banana	nucleus	33.61	39.74
GSMUA_Achr9P06430_001	Banana	nucleus	15.41	35.71
GSMUA_Achr6P32240_001	Banana	nucleus	38.1	34.96
GSMUA_Achr11P...	Banana	nucleus	39.22	33.25
GSMUA_Achr11P...	Banana	nucleus	40.06	30.69
GSMUA_Achr7P09590_001	Banana	nucleus	14.85	27.04
GSMUA_Achr2P15700_001	Banana	nucleus	15.13	24.11
GSMUA_Achr10P...	Banana	nucleus	15.13	23.68
GSMUA_Achr2P11520_001	Banana	nucleus	30.81	23.66
GSMUA_Achr4P30860_001	Banana	nucleus	14.85	22.65
GSMUA_Achr2P13350_001	Banana	nucleus	14.29	21.98
GSMUA_Achr6P29500_001	Banana	nucleus	13.45	20.08

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G18770_001	EnsemblPlants:GSMUA_Achr10P18770_001	EnsemblPlants:GSMUA_Achr10T18770_001
InterPro:IPR003851	UniProt:M0RJF2	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI000296F83D	InterPro:Znf_Dof	SEG:seg	:

Description

Putative Dof zinc finger protein DOF3.3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18770_001]

Coordinates

chr10:-:25356129..25358253

Molecular Weight (calculated)

39408.9 Da

IEP (calculated)

7.871

GRAVY (calculated)

-0.740

Length

357 amino acids

Sequence
(BLAST)

001: MSENGDAAIK LFGKTIPLRP SSSGGHDEKD HQEGEGALKS RKQDHESSDS QEKNEPATST SDLHTPASVD PEDVSTKNSS HKEEEEDDEE SQRSVKKPDK
101: TLPCPRCKSL DTKFCYYNNY SVNQPRYLCR NCQRYWTAGG TMRNVPVGAG RRKNKNSCHI RRIALSESAI RALQSDARYP QSTVLNFDSM ASALVLPENT
201: GSQNYQRTIA PIPCFSGSPW RYPWNPALSF CASSLPVPFY PAAAYWSGPW LSPAASSSPD GCLPRSGSST TPTLGKHSRD DTCILIPKTP RIDDPEEAAK
301: SSLWTMVGIS NGELLKAFQP KREIKNQVPT LLHVNPAALC RSLNFQEASR MIDLPFA

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.