Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P11200_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G39660.1 | GSMUA_Achr7P11200_001 | AT1G68050.1 | 16002617 |
| AT5G39660.1 | GSMUA_AchrUn_... | AT5G50680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P05020_001 | Banana | nucleus | 36.7 | 52.13 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 32.4 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 23.61 | 45.45 |
| GSMUA_Achr6P10720_001 | Banana | nucleus | 26.39 | 45.05 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 36.27 | 43.44 |
| GSMUA_Achr11P... | Banana | nucleus | 38.2 | 42.28 |
| GSMUA_Achr2P09110_001 | Banana | nucleus | 10.73 | 42.02 |
| GSMUA_Achr10P... | Banana | nucleus | 30.69 | 40.06 |
| GSMUA_Achr2P22000_001 | Banana | nucleus | 32.4 | 39.95 |
| GSMUA_Achr4P15140_001 | Banana | nucleus | 12.66 | 39.6 |
| KRH40083 | Soybean | nucleus | 41.63 | 38.57 |
| KRH01188 | Soybean | nucleus | 41.42 | 38.52 |
| GSMUA_Achr3P01850_001 | Banana | nucleus | 28.54 | 38.44 |
| PGSC0003DMT400047370 | Potato | nucleus | 36.27 | 38.24 |
| GSMUA_Achr4P08020_001 | Banana | nucleus | 12.23 | 37.75 |
| Solyc05g007880.2.1 | Tomato | nucleus | 35.62 | 37.64 |
| CDX74440 | Canola | nucleus | 32.4 | 35.61 |
| Bra028437.1-P | Field mustard | nucleus | 30.47 | 35.5 |
| CDY30261 | Canola | nucleus | 33.26 | 35.23 |
| GSMUA_Achr9P06430_001 | Banana | nucleus | 11.59 | 35.06 |
| CDX67434 | Canola | nucleus | 31.55 | 34.75 |
| Bra025655.1-P | Field mustard | nucleus | 32.83 | 34.38 |
| AT5G39660.1 | Thale cress | nucleus | 33.48 | 34.14 |
| CDY37010 | Canola | nucleus | 27.04 | 32.31 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 12.45 | 29.59 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 28.97 | 29.03 |
| GSMUA_Achr2P13350_001 | Banana | nucleus | 13.09 | 26.29 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 12.66 | 25.21 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 12.02 | 25.0 |
| GSMUA_Achr10P... | Banana | nucleus | 12.23 | 25.0 |
| GSMUA_Achr6P29500_001 | Banana | nucleus | 10.3 | 20.08 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr11G15580_001 | EnsemblPlants:GSMUA_Achr11P15580_001 |
| EnsemblPlants:GSMUA_Achr11T15580_001 | InterPro:IPR003851 | UniProt:M0RSI8 | PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31089 | UniParc:UPI0002959B9B | InterPro:Znf_Dof | SEG:seg | : |
Description
Putative Dof zinc finger protein DOF3.3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G15580_001]
Coordinates
chr11:-:17278080..17281065
Molecular Weight (calculated)
51200.2 Da
IEP (calculated)
7.765
GRAVY (calculated)
-0.657
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQARDPAIK LFGLTIPPQD GQGTAEPPGE SSSPSERDEK VSEERQMVDL QKPSTSSGLN NGNGDEVSTQ NDEESSGQKH EKDNSEANTS GQEKTLKKPD
101: KILPCPRCNS LNTKFCYYNN YNVNQPRHFC KKCQRYWTAG GTMRNLPVGS GKRKSKNAAV HHHSHIGVPS QGMIGNRVLK RNETVSKFDS EGPLCESMAA
201: VLNLEDQMNS CHENSEEGSC TTSVTPSNCM ENDPLKVASG MEKNHIQSYS NGVTHMSNLP CFPRLTWPCT WPLVPWPPQV MASSLQCQPV IPFPFFPASH
301: WGHMSSWPKD TWNVTCVRPS CDLLSSSSIS NNGCPSNNPP TLGKHSRDAI SESVEKTEKT LWVPKTLRID DPDEAAKSSI WATLGISPGK KIKRGGGIFE
401: AFQSKSDNNQ PSDATKVLHA NPAAMNGTGK YMLIMLSFAV RSLIKFCRIF VNLEDGTSSS YTVMLI
101: KILPCPRCNS LNTKFCYYNN YNVNQPRHFC KKCQRYWTAG GTMRNLPVGS GKRKSKNAAV HHHSHIGVPS QGMIGNRVLK RNETVSKFDS EGPLCESMAA
201: VLNLEDQMNS CHENSEEGSC TTSVTPSNCM ENDPLKVASG MEKNHIQSYS NGVTHMSNLP CFPRLTWPCT WPLVPWPPQV MASSLQCQPV IPFPFFPASH
301: WGHMSSWPKD TWNVTCVRPS CDLLSSSSIS NNGCPSNNPP TLGKHSRDAI SESVEKTEKT LWVPKTLRID DPDEAAKSSI WATLGISPGK KIKRGGGIFE
401: AFQSKSDNNQ PSDATKVLHA NPAAMNGTGK YMLIMLSFAV RSLIKFCRIF VNLEDGTSSS YTVMLI
001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI
Arabidopsis Description
CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.