Factsheet for Bra028437.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67434	Canola	nucleus	97.0	91.73
AT5G39660.1	Thale cress	nucleus	79.25	69.37
Bra025655.1-P	Field mustard	nucleus	77.0	69.21
Bra030124.1-P	Field mustard	nucleus	14.5	47.54
Bra010082.1-P	Field mustard	nucleus	29.0	43.28
Bra029261.1-P	Field mustard	nucleus	30.75	42.12
Bra010848.1-P	Field mustard	nucleus	17.0	38.86
Bra032292.1-P	Field mustard	nucleus	17.0	38.86
Bra021895.1-P	Field mustard	nucleus	15.5	36.9
KRH01188	Soybean	nucleus	44.25	35.33
KRH40083	Soybean	nucleus	44.25	35.19
Solyc05g007880.2.1	Tomato	nucleus	38.25	34.69
PGSC0003DMT400047370	Potato	nucleus	38.25	34.62
Bra024683.1-P	Field mustard	nucleus	26.5	32.42
Bra004396.1-P	Field mustard	nucleus	29.25	31.79
Bra018141.1-P	Field mustard	nucleus	33.0	30.91
GSMUA_Achr11P...	Banana	nucleus	35.5	30.47
Bra003994.1-P	Field mustard	nucleus	28.5	29.53
Bra031269.1-P	Field mustard	nucleus	13.25	27.75
Bra023888.1-P	Field mustard	nucleus	13.25	26.5
Bra001822.1-P	Field mustard	nucleus	13.5	26.34
Bra016286.1-P	Field mustard	nucleus	22.0	26.27
Bra036082.1-P	Field mustard	nucleus	14.25	25.68
Bra014297.1-P	Field mustard	nucleus	12.75	25.5
Bra011800.1-P	Field mustard	nucleus, plastid	15.0	24.79
Bra030423.1-P	Field mustard	nucleus	11.25	24.32
Bra030010.1-P	Field mustard	nucleus	13.75	23.4
Bra015609.1-P	Field mustard	nucleus	13.0	23.32
Bra012901.1-P	Field mustard	nucleus	14.0	23.14
Bra037135.1-P	Field mustard	nucleus	12.25	23.11
Bra012119.1-P	Field mustard	nucleus	11.5	20.91

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra028437	EnsemblPlants:Bra028437.1	EnsemblPlants:Bra028437.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4EI22	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	UniParc:UPI00025432A7	InterPro:Znf_Dof	SEG:seg	:	:

Description

AT5G39660 (E=2e-118) CDF2 | CDF2 (CYCLING DOF FACTOR 2); DNA binding / protein binding / transcription factor

Coordinates

chrA02:+:312740..314235

Molecular Weight (calculated)

44030.5 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.751

Length

400 amino acids

Sequence
(BLAST)

001: MSDPAMKLFG KTIPLPELVC VDSSSSYTEH QHQNPVRLSD SCTGDDEEMG DSGLAGDDVW FHGGDSESEK EEKANQCGEE SSNVTMASST KTDEESSSQN
101: NETCSREGKL KKPDKILPCP RCNSMETKLC YYNNYNVNQP RHFCKKCQRY WTAGGTMRNV PVGAGRRKNK SLASHYNRYV GITSAEDMHK AAARTDPNLM
201: TIGSDSVLCE SMASGLNLAE KSMLNTQTGL QEEPNEGLKI TVPLKNKETV AISPRTWTVL PFYPPPAYWS CPGVSPGTWN SFTWMPQPIS PSGGSSPYSP
301: TLGKHSRDES IAEPGTKRIS GRCLWVPKTL RIDDPEEAAK SSIWETLGIK KDEKADTFRA FRSSHKVKSC LSDGKLPGRR LELLANPAAL SRSANFHESS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.