Factsheet for Bra015609.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58082	Canola	nucleus	92.38	100.0
CDY20892	Canola	nucleus	90.13	97.57
AT1G47655.1	Thale cress	nucleus	74.44	79.43
CDY17009	Canola	nucleus	79.82	77.39
VIT_18s0001g11310.t01	Wine grape	nucleus	43.5	42.92
Bra036082.1-P	Field mustard	nucleus	35.87	36.04
Bra037135.1-P	Field mustard	nucleus	33.63	35.38
Bra030124.1-P	Field mustard	nucleus	19.28	35.25
Bra030010.1-P	Field mustard	nucleus	36.77	34.89
Bra031269.1-P	Field mustard	nucleus	29.6	34.55
Bra023888.1-P	Field mustard	nucleus	30.94	34.5
Bra012119.1-P	Field mustard	nucleus	33.18	33.64
Solyc04g079570.1.1	Tomato	nucleus	35.87	33.47
Bra012901.1-P	Field mustard	nucleus	35.87	33.06
Bra001822.1-P	Field mustard	nucleus	29.15	31.71
PGSC0003DMT400030496	Potato	nucleus	26.91	30.61
Bra030423.1-P	Field mustard	nucleus	25.11	30.27
KXG31638	Sorghum	nucleus	31.84	30.21
Bra014297.1-P	Field mustard	nucleus	26.91	30.0
Zm00001d039482_P001	Maize	nucleus	29.6	28.57
TraesCS3D01G108600.1	Wheat	nucleus	28.7	27.83
TraesCS3B01G125100.1	Wheat	nucleus	28.7	27.83
TraesCS3A01G106500.1	Wheat	nucleus	27.8	26.05
Bra032292.1-P	Field mustard	nucleus	19.73	25.14
Bra010848.1-P	Field mustard	nucleus	18.83	24.0
Bra021895.1-P	Field mustard	nucleus	17.49	23.21
Bra011800.1-P	Field mustard	nucleus, plastid	25.11	23.14
Bra029261.1-P	Field mustard	nucleus	23.32	17.81
Bra010082.1-P	Field mustard	nucleus	20.63	17.16
Bra016286.1-P	Field mustard	nucleus	21.08	14.03
Bra024683.1-P	Field mustard	nucleus	20.18	13.76
Bra004396.1-P	Field mustard	nucleus	21.97	13.32
Bra003994.1-P	Field mustard	nucleus	22.87	13.21
Bra028437.1-P	Field mustard	nucleus	23.32	13.0
Bra018141.1-P	Field mustard	nucleus	23.77	12.41
Bra025655.1-P	Field mustard	nucleus	23.77	11.91

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra015609	EnsemblPlants:Bra015609.1	EnsemblPlants:Bra015609.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	UniProt:M4DGI4	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31992	PANTHER:PTHR31992:SF77	UniParc:UPI0002544BB7	InterPro:Znf_Dof	SEG:seg	:

Description

AT1G47655 (E=2e-030) | Dof-type zinc finger domain-containing protein

Coordinates

chrA10:+:654845..655516

Molecular Weight (calculated)

23338.9 Da

IEP (calculated)

7.043

GRAVY (calculated)

-0.462

Length

223 amino acids

Sequence
(BLAST)

001: MPSESNQTRS ARVQGSTAAY PPPNLAEPLP CPRCNSIITK FCYYNNYNLL QPRYFCKSCR RYWTQGGTLR DVPVGGGTRR SSSKRNRSFS SNATTASSSS
101: CSSSIITTAN GSEPMNQGTA TNEAKGSHEI SGYGSFASLL SEQSDGAAFL ALGNGSGSGG LDYGFGYGYG LEELSIGYLG GGSGVEIPVV GGGDTWQIGE
201: IEAKSGDSLW PGLEISMQSN GAK

Best Arabidopsis Sequence Match ( AT1G47655.1 )
(BLAST)

001: MPSEPNQTRP TRVQPSTAAY PPPNLAEPLP CPRCNSTTTK FCYYNNYNLA QPRYYCKSCR RYWTQGGTLR DVPVGGGTRR SSSKRHRSFS TTATSSSSSS
101: SVITTTTQEP ATTEASQTKV TNLISGHGSF ASLLGLGSGN GGLDYGFGYG YGLEEMSIGY LGDSSVGEIP VVDGCGGDTW QIGEIEGKSG GDSLIWPGLE
201: ISMQTNDVK

Arabidopsis Description

DOF1.6Dof zinc finger protein DOF1.6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.