Factsheet for VIT_18s0001g11310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0255g00020.t01	Wine grape	nucleus	60.62	62.27
Solyc04g079570.1.1	Tomato	nucleus	50.88	48.12
VIT_03s0063g01350.t01	Wine grape	nucleus	35.84	46.82
CDY20892	Canola	nucleus	41.15	45.15
AT1G47655.1	Thale cress	nucleus	41.59	44.98
CDY58082	Canola	nucleus	40.27	44.17
Bra015609.1-P	Field mustard	nucleus	42.92	43.5
CDY17009	Canola	nucleus	40.71	40.0
VIT_09s0002g02490.t01	Wine grape	nucleus	37.61	39.35
PGSC0003DMT400030496	Potato	nucleus	34.07	39.29
VIT_10s0003g01260.t01	Wine grape	nucleus	23.01	32.7
TraesCS3D01G108600.1	Wheat	nucleus	33.19	32.61
TraesCS3B01G125100.1	Wheat	nucleus	32.74	32.17
KXG31638	Sorghum	nucleus	33.19	31.91
Zm00001d039482_P001	Maize	nucleus	32.3	31.6
TraesCS3A01G106500.1	Wheat	nucleus	31.86	30.25
VIT_01s0026g02580.t01	Wine grape	nucleus	32.74	15.51
VIT_14s0108g00980.t01	Wine grape	nucleus	33.19	14.68
VIT_17s0000g06310.t01	Wine grape	nucleus	30.53	14.59
VIT_08s0056g01230.t01	Wine grape	nucleus	30.09	13.77

Protein Annotations

EntrezGene:100254056	wikigene:100254056	MapMan:15.5.1.5	ProteinID:CCB45884	ProteinID:CCB45884.1	UniProt:F6H1E9
EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EntrezGene:LOC100254056	wikigene:LOC100254056
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF60
TIGR:TC54510	TIGR:TC62891	UniParc:UPI00015C75A1	ArrayExpress:VIT_18s0001g11310	EnsemblPlantsGene:VIT_18s0001g11310	EnsemblPlants:VIT_18s0001g11310.t01
unigene:Vvi.5636	RefSeq:XP_002284108	RefSeq:XP_002284108.1	InterPro:Znf_Dof	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:9622093..9623242

Molecular Weight (calculated)

23669.5 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.508

Length

226 amino acids

Sequence
(BLAST)

001: MPSESGERRV ARPQQVGGHP PQSEHLPCPR CDSTNTKFCY YNNYNLSQPR HFCKSCRRYW TQGGTLRNIP VGGGTRKNSK RSRTATSSSS STLETTPANP
101: ISVSPVLKAE TETPQRNGLS LNGDVSGGFT SLLNSQGPGF LALNGFSLGL GPGFDEMGFG PAKGVWSYPD VGDVVLGGDG TGSGGGSASS SICNTWQLSG
201: GEVGFVDGDC FAWPDLAIST PGQGLK

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.