Factsheet for VIT_14s0108g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g02580.t01	Wine grape	nucleus	62.23	66.67
VIT_17s0000g06310.t01	Wine grape	nucleus	59.1	63.85
VIT_10s0003g01260.t01	Wine grape	nucleus	15.85	50.94
VIT_08s0056g01230.t01	Wine grape	nucleus	38.55	39.88
VIT_07s0255g00020.t01	Wine grape	nucleus	15.26	35.45
VIT_03s0063g01350.t01	Wine grape	nucleus	11.35	33.53
VIT_18s0001g11310.t01	Wine grape	nucleus	14.68	33.19
VIT_09s0002g02490.t01	Wine grape	nucleus	13.7	32.41

Protein Annotations

EntrezGene:100254372	wikigene:100254372	MapMan:15.5.1.5	ProteinID:CCB47566	ProteinID:CCB47566.1	UniProt:F6H5U5
EMBL:FN595239	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EntrezGene:LOC100254372	wikigene:LOC100254372
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7
TIGR:TC65097	UniParc:UPI0001984C34	ArrayExpress:VIT_14s0108g00980	EnsemblPlantsGene:VIT_14s0108g00980	EnsemblPlants:VIT_14s0108g00980.t01	unigene:Vvi.17973
RefSeq:XP_002283706	RefSeq:XP_002283706.1	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:29617368..29620681

Molecular Weight (calculated)

55372.2 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.780

Length

511 amino acids

Sequence
(BLAST)

001: MAEAKDPAIK LFGKTIPLPE VATAAAGNDS PSGATVGGGG EDWVDQNRAT NSSPEEDCVR AGEEGREVDK DTSGGKVTDT RQEDGARSST SEEFTDPDAN
101: SGVNENPKTP SADKETATLK CSKNEEEQSE TSISQEKTLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP VGAGRRKNKN
201: STSHYRHITV SEALQSARTD VPNGIHHPAL KTNGTVLTFG SDTPLCESMA SVLNLAEKTM RNCTPNGFHK PEKLRIPVPY GGGENGDDHL SKSSVTASNS
301: KEEAGKTALP DQVMRNCHAF PPQIPCFPGA PWPYPWNSAQ WSPPVPAIPP VPPPAFCPSG FPMPFYPAAA YWGCTVPGAW NIPWVPQPSA LNHTAPSSGP
401: NSPTLGKHSR DENMLKASNF GEEELQKENN SERCLWIPKT LRIDDPGEAA RSSIWATLGI KNDKADPISG GRLFKSFQSK ADEKNHIAET SPVLQANPAA
501: LSRSLNFHES S

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.