Factsheet for VIT_08s0056g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01260.t01	Wine grape	nucleus	16.19	50.31
KRG94921	Soybean	nucleus	46.15	47.2
KRH64974	Soybean	nucleus	43.93	47.07
VIT_17s0000g06310.t01	Wine grape	nucleus	39.27	41.01
VIT_01s0026g02580.t01	Wine grape	nucleus	38.06	39.41
KRH44749	Soybean	nucleus	34.62	39.4
KRH13096	Soybean	nucleus, vacuole	36.44	38.63
VIT_14s0108g00980.t01	Wine grape	nucleus	39.88	38.55
TraesCS3D01G193100.1	Wheat	nucleus	35.22	36.55
TraesCS3A01G189600.1	Wheat	nucleus	35.02	36.34
Zm00001d040455_P001	Maize	nucleus	37.25	35.87
EES00579	Sorghum	nucleus	36.64	35.35
Os01t0277500-01	Rice	nucleus	38.87	34.66
Solyc02g088070.2.1	Tomato	nucleus	32.39	34.63
PGSC0003DMT400003359	Potato	nucleus	33.0	33.47
VIT_09s0002g02490.t01	Wine grape	nucleus	13.16	30.09
VIT_18s0001g11310.t01	Wine grape	nucleus	13.77	30.09
VIT_03s0063g01350.t01	Wine grape	nucleus	10.53	30.06
VIT_07s0255g00020.t01	Wine grape	nucleus	12.96	29.09

Protein Annotations

EntrezGene:100241530	wikigene:100241530	MapMan:15.5.1.5	ProteinID:CCB55999	ProteinID:CCB55999.1	UniProt:F6HMX4
EMBL:FN595995	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EntrezGene:LOC100241530	wikigene:LOC100241530
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF15
TIGR:TC66314	UniParc:UPI0001983D5A	ArrayExpress:VIT_08s0056g01230	EnsemblPlantsGene:VIT_08s0056g01230	EnsemblPlants:VIT_08s0056g01230.t01	unigene:Vvi.5809
RefSeq:XP_002275127	RefSeq:XP_002275127.1	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:1937113..1940026

Molecular Weight (calculated)

53195.3 Da

IEP (calculated)

7.241

GRAVY (calculated)

-0.597

Length

494 amino acids

Sequence
(BLAST)

001: MNGGDLAVSR DPAIKLFGTT IQTQICSNSP QKSLDAPSEI TKAEAEDPCA EDSRKPDGSS VSEDGKEEQQ TQVQMSGLQV HKDQGETNSS AQEKVLKKPD
101: KILPCPRCNS LETKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHLAS QYRQIMVSSD GVPTTVIEAS DSSNQQILSC GETSTTFRPS
201: TASGTVLKFG PEAPLCKSME TVLSIREQKR CAEMRTVNCG GNGEEPSSCA SSVSAPSFPE NEFPENVGHK DRPSLPASRS EIHPQLHQPC YPVPPWAFPW
301: NPGWTNVAPV APPQCSSDTV YAPNNSNPNS VQWCSRPMLA VPGFCAPTIP LQLVPPSYWG CMPIWGAGTG NISLAGSNDC LSPSSSTSNS CSGNASPTLG
401: KHSRDAQPAE EQKLEKCVLV PKTLRIIDPD EASKSSIWAT LGIKPDQKAP ISKGGIFKAF EPKSGAKTDL SDATQVLEAN PAALSRSQTF KEST

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.