Factsheet for VIT_03s0063g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0255g00020.t01	Wine grape	nucleus	49.71	39.09
KRH70017	Soybean	nucleus	48.55	35.9
VIT_18s0001g11310.t01	Wine grape	nucleus	46.82	35.84
KRH08373	Soybean	nucleus	47.4	34.75
Bra037135.1-P	Field mustard	nucleus	40.46	33.02
CDY18628	Canola	nucleus	39.88	32.55
VIT_09s0002g02490.t01	Wine grape	nucleus	40.46	32.41
CDX81350	Canola	nucleus	41.04	31.7
AT5G66940.1	Thale cress	nucleus	39.31	30.22
CDY12790	Canola	nucleus	38.15	30.14
Bra012119.1-P	Field mustard	nucleus	38.15	30.0
CDY01450	Canola	nucleus	38.15	30.0
Zm00001d039482_P001	Maize	nucleus	35.26	26.41
KXG31638	Sorghum	nucleus	35.26	25.96
VIT_10s0003g01260.t01	Wine grape	nucleus	23.7	25.79
TraesCS3D01G108600.1	Wheat	nucleus	32.95	24.78
TraesCS3B01G125100.1	Wheat	nucleus	32.95	24.78
TraesCS3A01G106500.1	Wheat	nucleus	32.37	23.53
VIT_01s0026g02580.t01	Wine grape	nucleus	32.95	11.95
VIT_17s0000g06310.t01	Wine grape	nucleus	31.21	11.42
VIT_14s0108g00980.t01	Wine grape	nucleus	33.53	11.35
VIT_08s0056g01230.t01	Wine grape	nucleus	30.06	10.53

Protein Annotations

EntrezGene:104878796	MapMan:15.5.1.5	ProteinID:CBI32493	ProteinID:CBI32493.3	UniProt:D7TPS0	EMBL:FN596006
GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF12	UniParc:UPI00015C88B2
ArrayExpress:VIT_03s0063g01350	EnsemblPlantsGene:VIT_03s0063g01350	EnsemblPlants:VIT_03s0063g01350.t01	RefSeq:XP_010647796.1	InterPro:Znf_Dof	SEG:seg

Description

No Description!

Coordinates

chr3:-:4802389..4802910

Molecular Weight (calculated)

18978.1 Da

IEP (calculated)

8.238

GRAVY (calculated)

-0.825

Length

173 amino acids

Sequence
(BLAST)

001: MQSEPGNHQR PTGPPPPPEN HHHLQCPRCN STNTKFCYYN NYNLSQPRHF CKSCRRYWTH GGALRDIPAR DNAPKRSRSR SSPVTPPLAS YPPQRVPPDL
101: NVGASGSFTR LLNSHGSEFS GLGAEYGLGS GLHEVGDGGA WQIGIGEEVE LVEGNGFTWP DIHVSAPGRI LKE

Best Arabidopsis Sequence Match ( AT5G66940.1 )
(BLAST)

001: MPSEFSESRR VPKIPHGQGG SVAIPTDQQE QLSCPRCEST NTKFCYYNNY NFSQPRHFCK SCRRYWTHGG TLRDIPVGGV SRKSSKRSRT YSSAATTSVV
101: GSRNFPLQAT PVLFPQSSSN GGITTAKGSA SSFYGGFSSL INYNAAVSRN GPGGGFNGPD AFGLGLGHGS YYEDVRYGQG ITVWPFSSGA TDAATTTSHI
201: AQIPATWQFE GQESKVGFVS GDYVA

Arabidopsis Description

DOF5.8Dof zinc finger protein DOF5.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.