Factsheet for Solyc02g088070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003359	Potato	nucleus	89.83	85.22
Solyc02g067230.2.1	Tomato	nucleus	54.11	53.53
Solyc02g076850.1.1	Tomato	nucleus	15.58	44.17
Solyc05g007880.2.1	Tomato	nucleus	41.77	43.76
Solyc03g115940.2.1	Tomato	nucleus	43.07	39.72
Solyc06g069760.2.1	Tomato	nucleus	36.58	34.35
Solyc06g062520.1.1	Tomato	nucleus	14.07	33.85
KRG94921	Soybean	nucleus	34.63	33.13
KRH64974	Soybean	nucleus	32.47	32.54
VIT_08s0056g01230.t01	Wine grape	nucleus	34.63	32.39
TraesCS3A01G189600.1	Wheat	nucleus	32.68	31.72
KRH44749	Soybean	nucleus	29.44	31.34
TraesCS3D01G193100.1	Wheat	nucleus	32.25	31.3
Solyc03g121400.1.1	Tomato	nucleus	13.64	30.0
Os01t0277500-01	Rice	nucleus	35.71	29.78
KRH13096	Soybean	nucleus, vacuole	29.44	29.18
Solyc02g065290.1.1	Tomato	nucleus	12.77	29.06
Solyc04g079570.1.1	Tomato	nucleus	14.94	28.87
Zm00001d040455_P001	Maize	nucleus	31.6	28.46
EES00579	Sorghum	nucleus	30.3	27.34
Solyc02g090220.2.1	Tomato	nucleus	14.72	26.36

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:K4BBW3	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	EnsemblPlantsGene:Solyc02g088070.2
EnsemblPlants:Solyc02g088070.2.1	UniParc:UPI00027684CE	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:50267256..50270486

Molecular Weight (calculated)

51227.5 Da

IEP (calculated)

6.391

GRAVY (calculated)

-0.756

Length

462 amino acids

Sequence
(BLAST)

001: MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DSSFLAGEVE QELKGLYDDC IDDNEHLTTE DSQDQNPIQQ RCDIINYYES STAKTSKSKE EHGETSNSHE
101: RNLKKPEKTL PCPRCNSMET KFCYFNNYNA SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KHKNSVLHYS HVSVSEALSN VRTNFPTETQ HPPLTLNGTI
201: LSFDTDKPVS ESMVSVLNVA DKGMQNCSGN GFQKYKELRI QAGDNGDDHS DGSSVTAISS KDSDNGLPNT PRKNYNSFPT HLPCFTGAPW PYIWSSVHCR
301: NAVPPPGYSL PGIPMSFIPA TTYWGCTIPG SWNVPWMSPP TASHNQMPLT PDPNSPTSRK HSRDENVLKS TGTEEEQRKE SDPGKRLWFP KTLRIDDPGE
401: AAKSPIWATL GIKHEVVNSV GGGLLSDFLP KNDERSCVSE NSTLLQVNPA AMSRSLNFNE SS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.