Factsheet for Solyc02g090220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026137	Potato	nucleus	87.21	93.75
VIT_07s0255g00020.t01	Wine grape	nucleus	55.81	65.45
Solyc02g065290.1.1	Tomato	nucleus	48.84	62.07
KRH08373	Soybean	nucleus	50.78	55.51
KRH70017	Soybean	nucleus	50.0	55.13
CDY18628	Canola	nucleus	37.6	45.75
Bra037135.1-P	Field mustard	nucleus	37.21	45.28
CDY12790	Canola	nucleus	37.98	44.75
Bra012119.1-P	Field mustard	nucleus	37.98	44.55
CDY01450	Canola	nucleus	37.98	44.55
CDX81350	Canola	nucleus	37.98	43.75
Solyc04g079570.1.1	Tomato	nucleus	40.31	43.51
AT5G66940.1	Thale cress	nucleus	36.43	41.78
Solyc03g121400.1.1	Tomato	nucleus	32.56	40.0
Solyc06g062520.1.1	Tomato	nucleus	27.52	36.98
KXG31638	Sorghum	nucleus	29.84	32.77
TraesCS3D01G108600.1	Wheat	nucleus	28.29	31.74
Zm00001d039482_P001	Maize	nucleus	28.29	31.6
TraesCS3B01G125100.1	Wheat	nucleus	27.91	31.3
TraesCS3A01G106500.1	Wheat	nucleus	27.13	29.41
Solyc02g076850.1.1	Tomato	nucleus	17.83	28.22
Solyc05g007880.2.1	Tomato	nucleus	26.36	15.42
Solyc02g088070.2.1	Tomato	nucleus	26.36	14.72
Solyc02g067230.2.1	Tomato	nucleus	25.19	13.92
Solyc06g069760.2.1	Tomato	nucleus	26.36	13.82
Solyc03g115940.2.1	Tomato	nucleus	25.97	13.37

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:K4BCH3	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF12	EnsemblPlantsGene:Solyc02g090220.2
EnsemblPlants:Solyc02g090220.2.1	UniParc:UPI0002769068	InterPro:Znf_Dof	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:51844667..51845698

Molecular Weight (calculated)

27379.1 Da

IEP (calculated)

8.034

GRAVY (calculated)

-0.307

Length

258 amino acids

Sequence
(BLAST)

001: MPSDVRATKQ QQGGAPAPEP EHLPCPRCDS TNTKFCYYNN YNFSQPRHFC KSCRRYWTHG GTLRDIPIGG GSRKNAKRSR TITTNSMNSS CLSSTLSPRD
101: YHHAPHPSHV SPFLVPLTAD HGGSLPFDVK PSVNMCGSFT SLLSSAQGPG GLLALGGFGL GVEDMGFGLG RPIWPFPGVS HNTSVDNNSN GAGASMYGST
201: WQLASGGEGG FVGAGGEIFN FPDLAISTHG NVFNCTFLAS GVLALEFRTA VPSIDHQL

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.