Factsheet for PGSC0003DMT400026137

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090220.2.1	Tomato	nucleus	93.75	87.21
VIT_07s0255g00020.t01	Wine grape	nucleus	61.67	67.27
PGSC0003DMT400034111	Potato	nucleus	50.0	61.86
KRH08373	Soybean	nucleus	57.08	58.05
KRH70017	Soybean	nucleus	56.25	57.69
Bra037135.1-P	Field mustard	nucleus	41.67	47.17
CDY18628	Canola	nucleus	41.25	46.7
CDY12790	Canola	nucleus	42.08	46.12
Bra012119.1-P	Field mustard	nucleus	42.08	45.91
CDY01450	Canola	nucleus	42.08	45.91
CDX81350	Canola	nucleus	42.5	45.54
AT5G66940.1	Thale cress	nucleus	40.83	43.56
PGSC0003DMT400006421	Potato	nucleus	34.17	39.42
PGSC0003DMT400030496	Potato	nucleus	30.83	37.76
KXG31638	Sorghum	nucleus	32.08	32.77
TraesCS3D01G108600.1	Wheat	nucleus	30.83	32.17
TraesCS3B01G125100.1	Wheat	nucleus	30.42	31.74
Zm00001d039482_P001	Maize	nucleus	30.42	31.6
TraesCS3A01G106500.1	Wheat	nucleus	29.58	29.83
PGSC0003DMT400087458	Potato	nucleus	19.17	27.88
PGSC0003DMT400047370	Potato	nucleus	28.33	15.38
PGSC0003DMT400064695	Potato	nucleus	27.08	13.98
PGSC0003DMT400003359	Potato	nucleus	27.92	13.76
PGSC0003DMT400083080	Potato	nucleus	27.92	13.62
PGSC0003DMT400050273	Potato	nucleus	28.33	13.52

Protein Annotations

EntrezGene:102598982	MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:M1AMQ1
PFAM:PD007478	PFAM:PF02701	EnsemblPlantsGene:PGSC0003DMG400010075	PGSC:PGSC0003DMG400010075	EnsemblPlants:PGSC0003DMT400026137	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31992	PANTHER:PTHR31992:SF12	UniParc:UPI000296542D	RefSeq:XP_006338240.1	InterPro:Znf_Dof
SEG:seg	:	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010075]

Coordinates

chr2:-:44546221..44547462

Molecular Weight (calculated)

25287.5 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.426

Length

240 amino acids

Sequence
(BLAST)

001: MPSDVSDRRA TKQQQGGAPA PEPEHLPCPR CDSTNTKFCY YNNYNFSQPR HFCKSCRRYW THGGTLRDIP IGGGSRKNAK RSRTITTNSI NSSCLSSTLS
101: PRDYHHAPNP SHVSPFLVPL TADHGGSLPF DVKPSVNMCG SFTSLLSSAQ GPGGLLALGG FGLGVGSGIE DMGFGLGRPI WPFPGVSHNS VDNNNNGAGA
201: SIFGSTWQLA SGGEGGFVGA GGEIFNFPDL AISTHGNGMK

Best Arabidopsis Sequence Match ( AT3G50410.1 )
(BLAST)

001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK

Arabidopsis Description

DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.