Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064695 | Potato | nucleus | 95.5 | 95.91 |
| Solyc02g088070.2.1 | Tomato | nucleus | 53.53 | 54.11 |
| Solyc05g007880.2.1 | Tomato | nucleus | 43.47 | 46.03 |
| Solyc02g076850.1.1 | Tomato | nucleus | 15.85 | 45.4 |
| Solyc03g115940.2.1 | Tomato | nucleus | 47.11 | 43.91 |
| Solyc06g069760.2.1 | Tomato | nucleus | 42.83 | 40.65 |
| TraesCS3A01G189600.1 | Wheat | nucleus | 35.76 | 35.08 |
| TraesCS3D01G193100.1 | Wheat | nucleus | 35.76 | 35.08 |
| Os01t0277500-01 | Rice | nucleus | 38.54 | 32.49 |
| Zm00001d040455_P001 | Maize | nucleus | 35.55 | 32.36 |
| EES00579 | Sorghum | nucleus | 34.9 | 31.84 |
| Solyc03g121400.1.1 | Tomato | nucleus | 13.92 | 30.95 |
| Solyc06g062520.1.1 | Tomato | nucleus | 12.63 | 30.73 |
| Solyc04g079570.1.1 | Tomato | nucleus | 14.78 | 28.87 |
| Solyc02g065290.1.1 | Tomato | nucleus | 12.21 | 28.08 |
| Solyc02g090220.2.1 | Tomato | nucleus | 13.92 | 25.19 |
Protein Annotations
| MapMan:15.5.1.5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | UniProt:K4B755 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | EnsemblPlantsGene:Solyc02g067230.2 | EnsemblPlants:Solyc02g067230.2.1 |
| UniParc:UPI00027691C1 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:-:37413250..37416436
Molecular Weight (calculated)
51285.2 Da
IEP (calculated)
4.580
GRAVY (calculated)
-0.793
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPAIKLFG RTIQLPDIPD SSGAQGDDSL PGDNNGEEDE EADKDDFGGN LDDDEEEMEI LTGKELQDQN SEPTKTDSIK ELPVDNDCST RPSKSEEEQG
101: EASNSQEKIL KKPDKIIPCP RCNSMETKFC YFNNYNVNQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK NSIPHYRQIS VSETLSNAQT DYPNGIQQPI
201: LAFGSPTPLC ESMASVLNIA DKTMHNCSQN GFHKPQEPGV PVSYVVGDNG DDHSRRSSVT SANSEDEVNK TVPDLLKKNC HNFPPYMTYY PGAPWPYPCS
301: PVPWNSAIPP PGYCPPGFPM PFYPAASYWG YTVAGSWNVP WMSPATVSLI QTPTTSGPIS PALGKHSRDE NIQKPLSSME EPSNESNPEK CLWVPKTLRI
401: DDPGEAAKSS IWATLGIKHD TVDSVGGSPF SAFQPKNDDN NRVSENSTVL QANPAALSRS VNFNESL
101: EASNSQEKIL KKPDKIIPCP RCNSMETKFC YFNNYNVNQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK NSIPHYRQIS VSETLSNAQT DYPNGIQQPI
201: LAFGSPTPLC ESMASVLNIA DKTMHNCSQN GFHKPQEPGV PVSYVVGDNG DDHSRRSSVT SANSEDEVNK TVPDLLKKNC HNFPPYMTYY PGAPWPYPCS
301: PVPWNSAIPP PGYCPPGFPM PFYPAASYWG YTVAGSWNVP WMSPATVSLI QTPTTSGPIS PALGKHSRDE NIQKPLSSME EPSNESNPEK CLWVPKTLRI
401: DDPGEAAKSS IWATLGIKHD TVDSVGGSPF SAFQPKNDDN NRVSENSTVL QANPAALSRS VNFNESL
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
Arabidopsis Description
CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.