Factsheet for Solyc06g069760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005300.2.1
Solyc03g006800.1.1
Solyc04g071990.2.1
Solyc12g056650.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	Solyc01g005300.2.1	AT1G68050.1	16002617
AT5G62430.1	Solyc04g071990.2.1	AT1G22770.1	17872410
AT5G62430.1	Solyc12g056650.1.1	AT1G22770.1	17872410
AT5G62430.1	Solyc01g005300.2.1	AT1G68050.1	16002617
AT5G62430.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083080	Potato	nucleus	94.11	94.11
Solyc03g115940.2.1	Tomato	nucleus	56.71	55.69
CDY00286	Canola	nucleus	27.64	49.82
CDY69084	Canola	nucleus	27.64	49.63
CDY67518	Canola	nucleus	29.27	49.32
AT5G62430.1	Thale cress	nucleus	29.67	48.99
CDY69244	Canola	nucleus	28.86	48.63
VIT_17s0000g06310.t01	Wine grape	nucleus	46.75	48.63
Bra029261.1-P	Field mustard	nucleus	28.46	47.95
Bra010082.1-P	Field mustard	nucleus	25.81	47.39
KRH03487	Soybean	nucleus	42.07	43.95
KRH56903	Soybean	nucleus	41.67	43.34
KRH54567	Soybean	nucleus	40.24	43.23
VIT_01s0026g02580.t01	Wine grape	nucleus	41.87	43.19
KRH63324	Soybean	nucleus	41.06	42.98
Solyc02g067230.2.1	Tomato	nucleus	40.65	42.83
Solyc02g076850.1.1	Tomato	nucleus	14.02	42.33
CDY66672	Canola	nucleus	34.96	40.28
Bra018141.1-P	Field mustard	nucleus	34.96	40.28
Solyc05g007880.2.1	Tomato	nucleus	35.98	40.14
CDY47405	Canola	nucleus	34.96	40.09
AT3G47500.1	Thale cress	nucleus	35.98	39.51
Solyc02g088070.2.1	Tomato	nucleus	34.35	36.58
EER95426	Sorghum	nucleus	29.88	34.67
Os03t0169600-01	Rice	nucleus	30.89	34.55
Os07t0685000-02	Rice	nucleus	33.33	34.45
TraesCS2A01G100800.1	Wheat	nucleus	33.13	34.03
TraesCS4A01G017700.1	Wheat	nucleus	30.08	33.87
TraesCS2B01G118000.1	Wheat	nucleus	32.93	33.82
TraesCS4B01G286400.1	Wheat	nucleus	29.67	33.72
TraesCS4D01G285100.1	Wheat	nucleus	30.28	33.71
HORVU2Hr1G017290.1	Barley	nucleus	32.52	33.68
HORVU4Hr1G074990.1	Barley	nucleus	30.08	33.48
OQU90492	Sorghum	nucleus	32.93	33.47
Zm00001d027846_P001	Maize	nucleus	29.27	33.33
TraesCS2D01G100300.1	Wheat	mitochondrion, nucleus	33.33	32.73
Solyc06g062520.1.1	Tomato	nucleus	12.6	32.29
Zm00001d022525_P001	Maize	nucleus	33.33	31.84
Solyc03g121400.1.1	Tomato	nucleus	13.21	30.95
Solyc02g065290.1.1	Tomato	nucleus	12.2	29.56
Solyc02g090220.2.1	Tomato	nucleus	13.82	26.36
Solyc04g079570.1.1	Tomato	nucleus	11.79	24.27

Protein Annotations

MapMan:15.5.1.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	UniProt:K4C8E8
PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7
EnsemblPlantsGene:Solyc06g069760.2	EnsemblPlants:Solyc06g069760.2.1	UniParc:UPI0002766D26	InterPro:Znf_Dof	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:43443026..43445633

Molecular Weight (calculated)

53494.5 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.760

Length

492 amino acids

Sequence
(BLAST)

001: MTCDSEIKLF GKILPVVVSG VGRGLSGSDG VIYDGNRNGS DLDRCLEGSK ASSVEKDEGS EYEKQEAEKD NITGELSEAK SEEGDQNQMI EESENPKTPS
101: ESESSPKSST EEDPQAVKSS KTENEPTNVT NSEQNNLKKP DKILPCPRCN SLDTKFCYYN NNNVNQPRHF CRSCQRYWTA GGTMRNLPVG AGRRKNKNLA
201: SQYRNISIPE GLLAAGIESP NGLIHHPLFK PNGTILSFGP DLPLCEPMAS ALNQAEKRVS TGIQNGSHKS EVKNSSCKGG DSGDECCRGI NIPTPNMMVE
301: EGKGEPHKAV MHSINGIPSP VPCLHGVPWP FPWNAAVPVS AICPIPFPMP FFPTPYWNCS VPPWSNPWLS PPLRAANEKT SGSDPTSSLG KHSREGDLLK
401: PSNPGGKEQS EQKYSEGSIL VPKTLRIDDP DEAAKSSIWS TLGIKYDSTN RGEFFKALQP KSNDKHNKAN TFPVLHTNPA ALSRSITFQQ GA

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.