Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62430.1 | CDY04787 | AT1G22770.1 | 17872410 |
| AT5G62430.1 | CDY21388 | AT1G22770.1 | 17872410 |
| AT5G62430.1 | CDX91612 | AT5G51910.1 | 21798944 |
| AT5G62430.1 | CDY27099 | AT5G51910.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00286 | Canola | nucleus | 93.07 | 93.41 |
| Bra010082.1-P | Field mustard | nucleus | 87.96 | 89.93 |
| CDY69244 | Canola | nucleus | 82.85 | 77.74 |
| CDY67518 | Canola | nucleus | 81.39 | 76.37 |
| AT5G62430.1 | Thale cress | nucleus | 78.47 | 72.15 |
| CDY66672 | Canola | nucleus | 65.33 | 41.92 |
| CDY47405 | Canola | nucleus | 65.33 | 41.72 |
| CDY71347 | Canola | nucleus | 20.07 | 41.67 |
| CDX99791 | Canola | nucleus | 23.36 | 36.99 |
| CDY50789 | Canola | nucleus | 23.36 | 36.57 |
| CDY37670 | Canola | nucleus | 22.26 | 36.31 |
| CDX90171 | Canola | nucleus | 22.99 | 36.21 |
| CDY43321 | Canola | nucleus | 22.99 | 36.21 |
| KRH54567 | Soybean | nucleus | 60.22 | 36.03 |
| CDY67393 | Canola | nucleus | 21.9 | 35.29 |
| CDY15647 | Canola | nucleus | 22.63 | 35.03 |
| KRH03487 | Soybean | nucleus | 59.85 | 34.82 |
| KRH63324 | Soybean | nucleus | 59.49 | 34.68 |
| KRH56903 | Soybean | nucleus | 59.49 | 34.46 |
| VIT_17s0000g06310.t01 | Wine grape | nucleus | 57.3 | 33.19 |
| CDY16193 | Canola | nucleus | 39.42 | 33.03 |
| VIT_01s0026g02580.t01 | Wine grape | nucleus | 55.11 | 31.66 |
| CDX95919 | Canola | nucleus | 41.61 | 30.98 |
| CDY01768 | Canola | nucleus | 41.61 | 30.98 |
| CDY50735 | Canola | extracellular | 40.51 | 30.49 |
| CDX74440 | Canola | nucleus | 46.72 | 30.19 |
| CDY07344 | Canola | nucleus | 42.34 | 30.05 |
| CDY72477 | Canola | nucleus | 40.15 | 29.89 |
| Solyc03g115940.2.1 | Tomato | nucleus | 54.01 | 29.54 |
| CDY67869 | Canola | nucleus | 41.24 | 29.35 |
| CDY30261 | Canola | nucleus | 47.08 | 29.32 |
| PGSC0003DMT400050273 | Potato | nucleus | 52.55 | 28.63 |
| CDY37010 | Canola | nucleus | 40.51 | 28.46 |
| CDX67434 | Canola | nucleus | 43.8 | 28.37 |
| CDY46443 | Canola | nucleus | 34.31 | 28.06 |
| PGSC0003DMT400083080 | Potato | nucleus | 50.0 | 27.85 |
| Solyc06g069760.2.1 | Tomato | nucleus | 49.63 | 27.64 |
| CDY44994 | Canola | nucleus | 27.01 | 27.41 |
| EER95426 | Sorghum | nucleus | 41.97 | 27.12 |
| TraesCS4A01G017700.1 | Wheat | nucleus | 43.07 | 27.0 |
| TraesCS4B01G286400.1 | Wheat | nucleus | 42.34 | 26.79 |
| CDY43923 | Canola | nucleus | 15.69 | 26.71 |
| Os03t0169600-01 | Rice | nucleus | 42.7 | 26.59 |
| CDY56923 | Canola | nucleus | 17.88 | 26.34 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 42.34 | 26.24 |
| HORVU4Hr1G074990.1 | Barley | nucleus | 42.34 | 26.24 |
| CDY50734 | Canola | nucleus | 25.55 | 25.83 |
| CDY52832 | Canola | nucleus | 20.8 | 25.68 |
| Zm00001d027846_P001 | Maize | nucleus | 40.15 | 25.46 |
| CDY51457 | Canola | nucleus | 17.52 | 25.13 |
| OQU90492 | Sorghum | nucleus | 44.16 | 25.0 |
| CDY37299 | Canola | nucleus | 18.25 | 25.0 |
| TraesCS2A01G100800.1 | Wheat | nucleus | 43.07 | 24.63 |
| HORVU2Hr1G017290.1 | Barley | nucleus | 42.34 | 24.42 |
| CDX69349 | Canola | nucleus, plastid | 21.53 | 24.38 |
| CDY58082 | Canola | nucleus | 18.25 | 24.27 |
| CDY20892 | Canola | nucleus | 18.25 | 24.27 |
| CDY32420 | Canola | nucleus | 18.25 | 24.27 |
| CDY48879 | Canola | nucleus | 18.25 | 24.27 |
| CDY52953 | Canola | nucleus | 17.15 | 24.23 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 42.34 | 24.22 |
| Os07t0685000-02 | Rice | nucleus | 41.97 | 24.16 |
| CDY17783 | Canola | nucleus | 20.07 | 24.02 |
| CDY46544 | Canola | nucleus | 17.52 | 24.0 |
| CDX75689 | Canola | nucleus, plastid | 21.17 | 23.97 |
| CDY69021 | Canola | nucleus | 17.15 | 23.86 |
| CDX83127 | Canola | nucleus | 20.07 | 23.4 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 42.7 | 23.35 |
| CDY54696 | Canola | nucleus | 20.07 | 23.11 |
| CDX87836 | Canola | nucleus | 15.33 | 23.08 |
| Zm00001d022525_P001 | Maize | nucleus | 42.34 | 22.52 |
| CDY12790 | Canola | nucleus | 17.88 | 22.37 |
| CDY02086 | Canola | nucleus | 19.71 | 22.31 |
| CDY01450 | Canola | nucleus | 17.88 | 22.27 |
| CDY23010 | Canola | nucleus | 19.71 | 21.86 |
| CDY18628 | Canola | nucleus | 16.79 | 21.7 |
| CDX81350 | Canola | nucleus | 17.52 | 21.43 |
| CDY17009 | Canola | nucleus | 17.88 | 21.3 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078JQK1 | UniProt:A0A078JQK1 | EnsemblPlants:CDY69084 | ProteinID:CDY69084 | ProteinID:CDY69084.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00083026001 | InterPro:IPR003851 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF7 | UniParc:UPI0004EB34F5 |
| InterPro:Znf_Dof | SEG:seg | : | : | : | : |
Description
BnaCnng61810DBnaCnng61810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQK1]
Coordinates
chrLK038615:-:1174..2719
Molecular Weight (calculated)
31080.6 Da
IEP (calculated)
9.118
GRAVY (calculated)
-0.842
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MQESKDQEIK LFGMKIPLST VLEAEEDGIS AEKNQNETLT DQVEKDKTLR KPTKIIPCPR CNSMETKFCY YNNYNVNQPR HFCKACQRYW TSGGTMRSVP
101: VGAGRRKNKN NSSSSLHNYQ HATISETNGP VLSFTHGDVQ KVSNNYRLMH SWPYMWNPGF YPVYPYWNVP MLSSSPNPSP NSTLGKHSRD EDETIKPKHR
201: NGSVLVPKTL RVDDPNEAAK SSIWATLGIK NEVMFKGFDS KKEGKINNEE TETSLVLCAN PAAVSRSANF HERL
101: VGAGRRKNKN NSSSSLHNYQ HATISETNGP VLSFTHGDVQ KVSNNYRLMH SWPYMWNPGF YPVYPYWNVP MLSSSPNPSP NSTLGKHSRD EDETIKPKHR
201: NGSVLVPKTL RVDDPNEAAK SSIWATLGIK NEVMFKGFDS KKEGKINNEE TETSLVLCAN PAAVSRSANF HERL
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Arabidopsis Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.