Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021895.1-P | Field mustard | nucleus | 99.4 | 99.4 |
| CDY67393 | Canola | nucleus | 98.81 | 97.65 |
| AT2G34140.1 | Thale cress | nucleus | 77.98 | 77.06 |
| CDY71347 | Canola | nucleus | 51.79 | 65.91 |
| CDX99791 | Canola | nucleus | 65.48 | 63.58 |
| CDY50789 | Canola | nucleus | 66.07 | 63.43 |
| CDY43321 | Canola | nucleus | 65.48 | 63.22 |
| CDX90171 | Canola | nucleus | 65.48 | 63.22 |
| KRH42862 | Soybean | nucleus | 27.98 | 60.26 |
| CDY15647 | Canola | nucleus | 63.1 | 59.89 |
| VIT_10s0003g01260.t01 | Wine grape | nucleus | 54.17 | 57.23 |
| KRH21283 | Soybean | nucleus | 45.24 | 51.7 |
| KRH58964 | Soybean | nucleus | 50.0 | 50.91 |
| KRH11011 | Soybean | nucleus | 44.05 | 48.37 |
| Solyc02g076850.1.1 | Tomato | nucleus | 45.24 | 46.63 |
| PGSC0003DMT400087458 | Potato | nucleus | 45.24 | 46.06 |
| CDY43923 | Canola | nucleus | 23.81 | 24.84 |
| CDY56923 | Canola | nucleus | 27.38 | 24.73 |
| CDY51457 | Canola | nucleus | 27.38 | 24.08 |
| CDY48879 | Canola | nucleus | 27.98 | 22.82 |
| CDY32420 | Canola | nucleus | 27.98 | 22.82 |
| CDY00286 | Canola | nucleus | 36.9 | 22.71 |
| CDY37299 | Canola | nucleus | 26.79 | 22.5 |
| CDY69021 | Canola | nucleus | 26.19 | 22.34 |
| CDY69084 | Canola | nucleus | 36.31 | 22.26 |
| CDX87836 | Canola | nucleus | 23.81 | 21.98 |
| CDY52953 | Canola | nucleus | 23.81 | 20.62 |
| CDY67518 | Canola | nucleus | 35.71 | 20.55 |
| CDY69244 | Canola | nucleus | 35.71 | 20.55 |
| CDY46544 | Canola | nucleus | 23.81 | 20.0 |
| CDY18628 | Canola | nucleus | 25.0 | 19.81 |
| CDY58082 | Canola | nucleus | 23.81 | 19.42 |
| CDY20892 | Canola | nucleus | 23.81 | 19.42 |
| CDY52832 | Canola | nucleus | 25.6 | 19.37 |
| CDY17783 | Canola | nucleus | 26.19 | 19.21 |
| CDX83127 | Canola | nucleus | 26.19 | 18.72 |
| CDY54696 | Canola | nucleus | 26.19 | 18.49 |
| CDX81350 | Canola | nucleus | 24.4 | 18.3 |
| CDY12790 | Canola | nucleus | 23.81 | 18.26 |
| CDY01450 | Canola | nucleus | 23.81 | 18.18 |
| CDY44994 | Canola | nucleus | 28.57 | 17.78 |
| CDX75689 | Canola | nucleus, plastid | 25.6 | 17.77 |
| CDY02086 | Canola | nucleus | 25.0 | 17.36 |
| CDX69349 | Canola | nucleus, plastid | 25.0 | 17.36 |
| CDY16193 | Canola | nucleus | 33.33 | 17.13 |
| CDY46443 | Canola | nucleus | 33.93 | 17.01 |
| CDY17009 | Canola | nucleus | 23.21 | 16.96 |
| CDY23010 | Canola | nucleus | 24.4 | 16.6 |
| CDY37010 | Canola | nucleus | 37.5 | 16.15 |
| CDY50734 | Canola | nucleus | 25.6 | 15.87 |
| CDY01768 | Canola | nucleus | 34.52 | 15.76 |
| CDX95919 | Canola | nucleus | 33.93 | 15.49 |
| CDY72477 | Canola | nucleus | 33.93 | 15.49 |
| CDY50735 | Canola | extracellular | 33.33 | 15.38 |
| CDX74440 | Canola | nucleus | 38.1 | 15.09 |
| CDY07344 | Canola | nucleus | 34.52 | 15.03 |
| CDX67434 | Canola | nucleus | 37.5 | 14.89 |
| CDY66672 | Canola | nucleus | 37.5 | 14.75 |
| CDY47405 | Canola | nucleus | 37.5 | 14.69 |
| CDY67869 | Canola | nucleus | 33.33 | 14.55 |
| CDY30261 | Canola | nucleus | 38.1 | 14.55 |
| TraesCS3D01G193100.1 | Wheat | nucleus | 39.29 | 13.87 |
| TraesCS3A01G189600.1 | Wheat | nucleus | 38.69 | 13.66 |
| Zm00001d040455_P001 | Maize | nucleus | 39.29 | 12.87 |
| EES00579 | Sorghum | nucleus | 38.69 | 12.7 |
| Os01t0277500-01 | Rice | nucleus | 41.67 | 12.64 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078HH54 | UniProt:A0A078HH54 | EnsemblPlants:CDY37670 | ProteinID:CDY37670 | ProteinID:CDY37670.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00064561001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF14 | UniParc:UPI0004EE9CCC | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g19980DBnaA04g19980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH54]
Coordinates
chrLK032406:+:24207..24713
Molecular Weight (calculated)
18693.4 Da
IEP (calculated)
9.640
GRAVY (calculated)
-0.565
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQDLQGIK LFGKTIACNV NITHKIKNED EKQPSDPTVR SSSLSDPTVE KRPDKIIACP RCKSMETKFC YFNNYNANQP RHFCKSCHRY WTAGGALRNV
101: PVGAGRRKTK PLARVVVGML GDGNEAHHVE LINGLLSHEL HSAAAARGGF RHDFSLKRLR CFSDGEPC
101: PVGAGRRKTK PLARVVVGML GDGNEAHHVE LINGLLSHEL HSAAAARGGF RHDFSLKRLR CFSDGEPC
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.