Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62430.1 | CDY04787 | AT1G22770.1 | 17872410 |
| AT5G62430.1 | CDY21388 | AT1G22770.1 | 17872410 |
| AT5G62430.1 | CDX91612 | AT5G51910.1 | 21798944 |
| AT5G62430.1 | CDY27099 | AT5G51910.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69244 | Canola | nucleus | 97.95 | 97.95 |
| Bra029261.1-P | Field mustard | nucleus | 96.92 | 96.92 |
| CDY00286 | Canola | nucleus | 76.37 | 81.69 |
| CDY69084 | Canola | nucleus | 76.37 | 81.39 |
| AT5G62430.1 | Thale cress | nucleus | 78.08 | 76.51 |
| CDY47405 | Canola | nucleus | 66.44 | 45.22 |
| CDY66672 | Canola | nucleus | 66.1 | 45.2 |
| CDY71347 | Canola | nucleus | 19.52 | 43.18 |
| CDX99791 | Canola | nucleus | 23.29 | 39.31 |
| CDY50789 | Canola | nucleus | 23.29 | 38.86 |
| KRH54567 | Soybean | nucleus | 58.22 | 37.12 |
| CDX90171 | Canola | nucleus | 21.92 | 36.78 |
| CDY43321 | Canola | nucleus | 21.92 | 36.78 |
| KRH56903 | Soybean | nucleus | 58.9 | 36.36 |
| KRH03487 | Soybean | nucleus | 58.56 | 36.31 |
| CDY15647 | Canola | nucleus | 21.92 | 36.16 |
| KRH63324 | Soybean | nucleus | 57.53 | 35.74 |
| CDY37670 | Canola | nucleus | 20.55 | 35.71 |
| VIT_17s0000g06310.t01 | Wine grape | nucleus | 56.85 | 35.1 |
| CDY67393 | Canola | nucleus | 20.21 | 34.71 |
| CDY16193 | Canola | nucleus | 38.36 | 34.25 |
| VIT_01s0026g02580.t01 | Wine grape | nucleus | 55.14 | 33.75 |
| CDX95919 | Canola | nucleus | 41.1 | 32.61 |
| CDY01768 | Canola | nucleus | 41.1 | 32.61 |
| CDX74440 | Canola | nucleus | 47.26 | 32.55 |
| CDY07344 | Canola | nucleus | 42.12 | 31.87 |
| CDY30261 | Canola | nucleus | 47.6 | 31.59 |
| CDY72477 | Canola | nucleus | 39.38 | 31.25 |
| CDY67869 | Canola | nucleus | 41.1 | 31.17 |
| CDY50735 | Canola | extracellular | 38.36 | 30.77 |
| Solyc03g115940.2.1 | Tomato | nucleus | 52.4 | 30.54 |
| CDX67434 | Canola | nucleus | 44.18 | 30.5 |
| CDY37010 | Canola | nucleus | 40.41 | 30.26 |
| PGSC0003DMT400083080 | Potato | nucleus | 49.66 | 29.47 |
| PGSC0003DMT400050273 | Potato | nucleus | 50.68 | 29.42 |
| Solyc06g069760.2.1 | Tomato | nucleus | 49.32 | 29.27 |
| CDY46443 | Canola | nucleus | 32.88 | 28.66 |
| CDY44994 | Canola | nucleus | 26.37 | 28.52 |
| Os03t0169600-01 | Rice | nucleus | 42.81 | 28.41 |
| TraesCS4A01G017700.1 | Wheat | nucleus | 42.12 | 28.15 |
| EER95426 | Sorghum | nucleus | 40.75 | 28.07 |
| TraesCS4B01G286400.1 | Wheat | nucleus | 41.44 | 27.94 |
| CDY50734 | Canola | nucleus | 25.68 | 27.68 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 41.78 | 27.6 |
| CDY56923 | Canola | nucleus | 17.47 | 27.42 |
| HORVU4Hr1G074990.1 | Barley | nucleus | 41.44 | 27.38 |
| CDY43923 | Canola | nucleus | 15.07 | 27.33 |
| Zm00001d027846_P001 | Maize | nucleus | 39.73 | 26.85 |
| CDY51457 | Canola | nucleus | 17.12 | 26.18 |
| CDY52832 | Canola | nucleus | 19.86 | 26.13 |
| OQU90492 | Sorghum | nucleus | 43.15 | 26.03 |
| Os07t0685000-02 | Rice | nucleus | 42.12 | 25.84 |
| CDY17783 | Canola | nucleus | 19.86 | 25.33 |
| CDY52953 | Canola | nucleus | 16.78 | 25.26 |
| HORVU2Hr1G017290.1 | Barley | nucleus | 40.75 | 25.05 |
| TraesCS2A01G100800.1 | Wheat | nucleus | 41.1 | 25.05 |
| CDY46544 | Canola | nucleus | 17.12 | 25.0 |
| CDY37299 | Canola | nucleus | 17.12 | 25.0 |
| CDX69349 | Canola | nucleus, plastid | 20.55 | 24.79 |
| CDY48879 | Canola | nucleus | 17.47 | 24.76 |
| CDY32420 | Canola | nucleus | 17.47 | 24.76 |
| Zm00001d022525_P001 | Maize | nucleus | 43.49 | 24.66 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 40.41 | 24.63 |
| CDX75689 | Canola | nucleus, plastid | 20.21 | 24.38 |
| CDY69021 | Canola | nucleus | 16.44 | 24.37 |
| CDY20892 | Canola | nucleus | 17.12 | 24.27 |
| CDY58082 | Canola | nucleus | 17.12 | 24.27 |
| CDX83127 | Canola | nucleus | 19.52 | 24.26 |
| CDY12790 | Canola | nucleus | 18.15 | 24.2 |
| CDY54696 | Canola | nucleus | 19.52 | 23.95 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 40.75 | 23.75 |
| CDY01450 | Canola | nucleus | 17.81 | 23.64 |
| CDX87836 | Canola | nucleus | 14.73 | 23.63 |
| CDY02086 | Canola | nucleus | 19.18 | 23.14 |
| CDY18628 | Canola | nucleus | 16.78 | 23.11 |
| CDX81350 | Canola | nucleus | 17.47 | 22.77 |
| CDY23010 | Canola | nucleus | 19.18 | 22.67 |
| CDY17009 | Canola | nucleus | 16.78 | 21.3 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078JIW2 | UniProt:A0A078JIW2 | EnsemblPlants:CDY67518 | ProteinID:CDY67518 | ProteinID:CDY67518.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00064348001 | InterPro:IPR003851 | PFAM:PD007478 |
| PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF7 | UniParc:UPI0004EF0CD5 |
| InterPro:Znf_Dof | : | : | : | : | : |
Description
BnaAnng24480DBnaAnng24480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIW2]
Coordinates
chrLK036201:-:728..2255
Molecular Weight (calculated)
33426.3 Da
IEP (calculated)
8.967
GRAVY (calculated)
-0.878
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MLESKDPAIK LFGMKIPLSS TVFEAEEYEL SAEQNQNETL TDQSDKEKNL KKPTKILPCP RCNSMETKFC YYNNYNVNQP RHFCKACQRY WTSGGTMRSV
101: PVGAGRRKNK NNSSSHYRHV TINETNGPVL SFNLRDDHKT LEKNNHQPVD NSRTRNNEMN GLRCIPGVSW PYTWNHGFYP VYPYWNVPMV SSSPYSTPNS
201: TLGKHSREED ETIKRKQMNG SVLVPKTLRI DDPNEAAKSS IWTTLGIKNE VMFKGFDSKK EVSINKEETE TSLVLCANPA ALSRSVNFHE QM
101: PVGAGRRKNK NNSSSHYRHV TINETNGPVL SFNLRDDHKT LEKNNHQPVD NSRTRNNEMN GLRCIPGVSW PYTWNHGFYP VYPYWNVPMV SSSPYSTPNS
201: TLGKHSREED ETIKRKQMNG SVLVPKTLRI DDPNEAAKSS IWTTLGIKNE VMFKGFDSKK EVSINKEETE TSLVLCANPA ALSRSVNFHE QM
001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM
Arabidopsis Description
CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.