Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37670 | Canola | nucleus | 97.65 | 98.81 |
| Bra021895.1-P | Field mustard | nucleus | 97.06 | 98.21 |
| AT2G34140.1 | Thale cress | nucleus | 77.06 | 77.06 |
| CDY71347 | Canola | nucleus | 51.18 | 65.91 |
| CDX99791 | Canola | nucleus | 64.71 | 63.58 |
| CDY50789 | Canola | nucleus | 65.29 | 63.43 |
| CDY43321 | Canola | nucleus | 64.71 | 63.22 |
| CDX90171 | Canola | nucleus | 64.71 | 63.22 |
| CDY15647 | Canola | nucleus | 61.76 | 59.32 |
| KRH42862 | Soybean | nucleus | 27.06 | 58.97 |
| VIT_10s0003g01260.t01 | Wine grape | nucleus | 53.53 | 57.23 |
| KRH21283 | Soybean | nucleus | 44.12 | 51.02 |
| KRH58964 | Soybean | nucleus | 49.41 | 50.91 |
| KRH11011 | Soybean | nucleus | 42.94 | 47.71 |
| Solyc02g076850.1.1 | Tomato | nucleus | 44.71 | 46.63 |
| PGSC0003DMT400087458 | Potato | nucleus | 44.71 | 46.06 |
| CDY43923 | Canola | nucleus | 23.53 | 24.84 |
| CDY56923 | Canola | nucleus | 27.06 | 24.73 |
| CDY51457 | Canola | nucleus | 27.06 | 24.08 |
| CDY48879 | Canola | nucleus | 27.65 | 22.82 |
| CDY32420 | Canola | nucleus | 27.65 | 22.82 |
| CDY37299 | Canola | nucleus | 26.47 | 22.5 |
| CDY00286 | Canola | nucleus | 35.88 | 22.34 |
| CDY69021 | Canola | nucleus | 25.88 | 22.34 |
| CDX87836 | Canola | nucleus | 23.53 | 21.98 |
| CDY69084 | Canola | nucleus | 35.29 | 21.9 |
| CDY52953 | Canola | nucleus | 23.53 | 20.62 |
| CDY69244 | Canola | nucleus | 34.71 | 20.21 |
| CDY67518 | Canola | nucleus | 34.71 | 20.21 |
| CDY46544 | Canola | nucleus | 23.53 | 20.0 |
| CDY18628 | Canola | nucleus | 24.71 | 19.81 |
| CDY58082 | Canola | nucleus | 23.53 | 19.42 |
| CDY20892 | Canola | nucleus | 23.53 | 19.42 |
| CDY52832 | Canola | nucleus | 25.29 | 19.37 |
| CDY17783 | Canola | nucleus | 25.88 | 19.21 |
| CDX83127 | Canola | nucleus | 25.88 | 18.72 |
| CDY54696 | Canola | nucleus | 25.88 | 18.49 |
| CDX81350 | Canola | nucleus | 24.12 | 18.3 |
| CDY12790 | Canola | nucleus | 23.53 | 18.26 |
| CDY01450 | Canola | nucleus | 23.53 | 18.18 |
| CDY44994 | Canola | nucleus | 28.82 | 18.15 |
| CDX75689 | Canola | nucleus, plastid | 25.29 | 17.77 |
| CDY16193 | Canola | nucleus | 33.53 | 17.43 |
| CDY02086 | Canola | nucleus | 24.71 | 17.36 |
| CDX69349 | Canola | nucleus, plastid | 24.71 | 17.36 |
| CDY46443 | Canola | nucleus | 34.12 | 17.31 |
| CDY17009 | Canola | nucleus | 22.94 | 16.96 |
| CDY23010 | Canola | nucleus | 24.12 | 16.6 |
| CDY50734 | Canola | nucleus | 25.88 | 16.24 |
| CDY37010 | Canola | nucleus | 36.47 | 15.9 |
| CDY01768 | Canola | nucleus | 34.12 | 15.76 |
| CDY50735 | Canola | extracellular | 33.53 | 15.66 |
| CDY72477 | Canola | nucleus | 33.53 | 15.49 |
| CDX95919 | Canola | nucleus | 33.53 | 15.49 |
| CDY07344 | Canola | nucleus | 34.12 | 15.03 |
| CDY66672 | Canola | nucleus | 37.65 | 14.99 |
| CDY47405 | Canola | nucleus | 37.65 | 14.92 |
| CDX74440 | Canola | nucleus | 37.06 | 14.86 |
| CDX67434 | Canola | nucleus | 36.47 | 14.66 |
| CDY67869 | Canola | nucleus | 32.94 | 14.55 |
| CDY30261 | Canola | nucleus | 37.06 | 14.32 |
| TraesCS3D01G193100.1 | Wheat | nucleus | 38.24 | 13.66 |
| TraesCS3A01G189600.1 | Wheat | nucleus | 37.65 | 13.45 |
| Zm00001d040455_P001 | Maize | nucleus | 38.24 | 12.67 |
| EES00579 | Sorghum | nucleus | 37.65 | 12.5 |
| Os01t0277500-01 | Rice | nucleus | 40.59 | 12.45 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078JIK6 | UniProt:A0A078JIK6 | EnsemblPlants:CDY67393 | ProteinID:CDY67393 | ProteinID:CDY67393.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00062886001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | PANTHER:PTHR31089:SF14 | UniParc:UPI0004EF0E9F | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g44370DBnaC04g44370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIK6]
Coordinates
chrLK036056:+:7540..8052
Molecular Weight (calculated)
18905.6 Da
IEP (calculated)
9.408
GRAVY (calculated)
-0.588
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQDLQGIK LFGKTIACNV NITDTHKIKN EDEKQPSDPT VRSSSLSDPT VEKRPDKIIA CPRCKSMDTK FCYFNNYNAN QPRHFCKSCH RYWTAGGALR
101: NVPVGAGRRK TKPLARVVVG MLGDGNEAHH VELINGLLSH ELHSAAAARG GFRHDFPLKR LRCFSDGEPC
101: NVPVGAGRRK TKPLARVVVG MLGDGNEAHH VELINGLLSH ELHSAAAARG GFRHDFPLKR LRCFSDGEPC
001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC
Arabidopsis Description
CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.