Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030010.1-P | Field mustard | nucleus | 97.9 | 99.15 |
| CDX83127 | Canola | nucleus | 97.9 | 99.15 |
| CDY17783 | Canola | nucleus | 78.57 | 81.66 |
| CDY02086 | Canola | nucleus | 80.67 | 79.34 |
| CDY52832 | Canola | nucleus | 73.95 | 79.28 |
| CDY23010 | Canola | nucleus | 79.41 | 76.52 |
| AT3G50410.1 | Thale cress | nucleus | 78.57 | 73.91 |
| CDY18628 | Canola | nucleus | 52.52 | 58.96 |
| CDY01450 | Canola | nucleus | 53.78 | 58.18 |
| CDY12790 | Canola | nucleus | 53.36 | 57.99 |
| CDX81350 | Canola | nucleus | 52.1 | 55.36 |
| KRH70017 | Soybean | nucleus | 50.42 | 51.28 |
| KRH08373 | Soybean | nucleus | 47.9 | 48.31 |
| CDY20892 | Canola | nucleus | 34.03 | 39.32 |
| CDY58082 | Canola | nucleus | 33.61 | 38.84 |
| CDY56923 | Canola | nucleus | 29.83 | 38.17 |
| CDY51457 | Canola | nucleus | 29.41 | 36.65 |
| CDY43923 | Canola | nucleus | 23.95 | 35.4 |
| CDX87836 | Canola | nucleus | 26.47 | 34.62 |
| CDY52953 | Canola | nucleus | 28.15 | 34.54 |
| CDY69021 | Canola | nucleus | 28.57 | 34.52 |
| CDY17009 | Canola | nucleus | 32.77 | 33.91 |
| CDY37299 | Canola | nucleus | 28.15 | 33.5 |
| CDY46544 | Canola | nucleus | 28.15 | 33.5 |
| CDY32420 | Canola | nucleus | 28.99 | 33.5 |
| CDY48879 | Canola | nucleus | 28.99 | 33.5 |
| CDY71347 | Canola | nucleus | 18.49 | 33.33 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 31.93 | 33.04 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 31.51 | 32.61 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 31.51 | 31.51 |
| Zm00001d039482_P001 | Maize | nucleus | 30.25 | 31.17 |
| KXG31638 | Sorghum | nucleus | 30.25 | 30.64 |
| CDX99791 | Canola | nucleus | 20.59 | 28.32 |
| CDY43321 | Canola | nucleus | 20.59 | 28.16 |
| CDX90171 | Canola | nucleus | 20.59 | 28.16 |
| CDY50789 | Canola | nucleus | 20.59 | 28.0 |
| CDY15647 | Canola | nucleus | 20.17 | 27.12 |
| CDY37670 | Canola | nucleus | 18.49 | 26.19 |
| CDY67393 | Canola | nucleus | 18.49 | 25.88 |
| CDX69349 | Canola | nucleus, plastid | 25.21 | 24.79 |
| CDX75689 | Canola | nucleus, plastid | 24.37 | 23.97 |
| CDY69244 | Canola | nucleus | 24.79 | 20.21 |
| CDY00286 | Canola | nucleus | 23.11 | 20.15 |
| CDY69084 | Canola | nucleus | 23.11 | 20.07 |
| CDY67518 | Canola | nucleus | 23.95 | 19.52 |
| CDY44994 | Canola | nucleus | 21.85 | 19.26 |
| CDY16193 | Canola | nucleus | 25.21 | 18.35 |
| CDY46443 | Canola | nucleus | 24.37 | 17.31 |
| CDY50734 | Canola | nucleus | 18.49 | 16.24 |
| CDY50735 | Canola | extracellular | 24.79 | 16.21 |
| CDY07344 | Canola | nucleus | 26.05 | 16.06 |
| CDX95919 | Canola | nucleus | 24.79 | 16.03 |
| CDY67869 | Canola | nucleus | 25.63 | 15.84 |
| CDY01768 | Canola | nucleus | 24.37 | 15.76 |
| CDY66672 | Canola | nucleus | 27.31 | 15.22 |
| CDY72477 | Canola | nucleus | 23.53 | 15.22 |
| CDY47405 | Canola | nucleus | 27.31 | 15.15 |
| CDX74440 | Canola | nucleus | 24.79 | 13.92 |
| CDX67434 | Canola | nucleus | 23.95 | 13.48 |
| CDY30261 | Canola | nucleus | 24.79 | 13.41 |
| CDY37010 | Canola | nucleus | 21.85 | 13.33 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078IZQ4 | UniProt:A0A078IZQ4 | EnsemblPlants:CDY54696 | ProteinID:CDY54696 | ProteinID:CDY54696.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00014510001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF12 | UniParc:UPI0004EAF6C8 | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g42310DBnaC01g42310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZQ4]
Coordinates
chrLK033343:-:28393..29109
Molecular Weight (calculated)
24970.9 Da
IEP (calculated)
9.050
GRAVY (calculated)
-0.388
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTSNTNAM RLHGVITGNP PPATEQQEQL PCPRCNSTNT KFCYYNNYNF SQPRHFCKSC RRYWTHGGTL RDIPVGGGTR KAAKRSRTCS SSAGSRSVPL
101: QATPVLFPQS SISNGVSHTV TAPLDGKGSA LSLSGSFTSL LNQNATATHG SGSVLGIGLG SGYDDVSFGL GRAVWPFSTV GDAGTTNVGS NGGHQGVVTI
201: PATWQFEGLE TNNAGGFVSG EYFAWPDLSI TTSGNSHK
101: QATPVLFPQS SISNGVSHTV TAPLDGKGSA LSLSGSFTSL LNQNATATHG SGSVLGIGLG SGYDDVSFGL GRAVWPFSTV GDAGTTNVGS NGGHQGVVTI
201: PATWQFEGLE TNNAGGFVSG EYFAWPDLSI TTSGNSHK
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Arabidopsis Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.