Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023888.1-P | Field mustard | nucleus | 93.91 | 92.5 |
| CDY37299 | Canola | nucleus | 93.4 | 92.0 |
| CDY32420 | Canola | nucleus | 88.32 | 84.47 |
| CDY56923 | Canola | nucleus | 79.19 | 83.87 |
| CDY48879 | Canola | nucleus | 86.8 | 83.01 |
| CDY51457 | Canola | nucleus | 80.2 | 82.72 |
| AT3G21270.1 | Thale cress | nucleus | 80.71 | 77.94 |
| CDY46544 | Canola | nucleus | 58.38 | 57.5 |
| CDY52953 | Canola | nucleus | 55.33 | 56.19 |
| CDY43923 | Canola | nucleus | 45.18 | 55.28 |
| CDX87836 | Canola | nucleus | 49.75 | 53.85 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 45.69 | 45.92 |
| KRH47156 | Soybean | nucleus | 48.22 | 45.02 |
| KRH09992 | Soybean | nucleus | 46.7 | 43.6 |
| KRH44186 | Soybean | nucleus | 46.7 | 43.19 |
| KRH23341 | Soybean | nucleus | 46.19 | 42.92 |
| VIT_09s0002g02490.t01 | Wine grape | nucleus | 45.18 | 41.2 |
| GSMUA_Achr10P... | Banana | nucleus | 46.19 | 39.91 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 43.15 | 37.95 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 41.12 | 34.62 |
| CDY71347 | Canola | nucleus | 22.34 | 33.33 |
| CDY20892 | Canola | nucleus | 32.49 | 31.07 |
| CDY58082 | Canola | nucleus | 31.98 | 30.58 |
| CDY52832 | Canola | nucleus | 34.01 | 30.18 |
| CDY17783 | Canola | nucleus | 33.5 | 28.82 |
| CDY54696 | Canola | nucleus | 34.52 | 28.57 |
| CDY02086 | Canola | nucleus | 35.03 | 28.51 |
| CDX83127 | Canola | nucleus | 34.01 | 28.51 |
| CDY23010 | Canola | nucleus | 35.03 | 27.94 |
| CDY17009 | Canola | nucleus | 31.98 | 27.39 |
| CDY18628 | Canola | nucleus | 29.44 | 27.36 |
| CDY12790 | Canola | nucleus | 29.44 | 26.48 |
| CDY01450 | Canola | nucleus | 29.44 | 26.36 |
| CDX81350 | Canola | nucleus | 29.95 | 26.34 |
| CDY37670 | Canola | nucleus | 22.34 | 26.19 |
| CDX99791 | Canola | nucleus | 22.84 | 26.01 |
| CDY15647 | Canola | nucleus | 23.35 | 25.99 |
| CDY67393 | Canola | nucleus | 22.34 | 25.88 |
| CDY50789 | Canola | nucleus | 22.84 | 25.71 |
| CDY43321 | Canola | nucleus | 22.34 | 25.29 |
| CDX90171 | Canola | nucleus | 22.34 | 25.29 |
| CDX69349 | Canola | nucleus, plastid | 28.93 | 23.55 |
| CDX75689 | Canola | nucleus, plastid | 28.43 | 23.14 |
| CDY00286 | Canola | nucleus | 23.86 | 17.22 |
| CDY69084 | Canola | nucleus | 23.86 | 17.15 |
| CDY44994 | Canola | nucleus | 23.35 | 17.04 |
| CDY69244 | Canola | nucleus | 24.37 | 16.44 |
| CDY67518 | Canola | nucleus | 24.37 | 16.44 |
| CDY50734 | Canola | nucleus | 20.81 | 15.13 |
| CDY16193 | Canola | nucleus | 24.87 | 14.98 |
| CDY46443 | Canola | nucleus | 24.87 | 14.63 |
| CDY37010 | Canola | nucleus | 26.9 | 13.59 |
| CDX95919 | Canola | nucleus | 25.38 | 13.59 |
| CDY72477 | Canola | nucleus | 25.38 | 13.59 |
| CDY50735 | Canola | extracellular | 24.87 | 13.46 |
| CDY01768 | Canola | nucleus | 24.87 | 13.32 |
| CDY07344 | Canola | nucleus | 25.38 | 12.95 |
| CDY67869 | Canola | nucleus | 24.87 | 12.73 |
| CDX67434 | Canola | nucleus | 26.4 | 12.29 |
| CDX74440 | Canola | nucleus | 26.4 | 12.26 |
| CDY47405 | Canola | nucleus | 26.4 | 12.12 |
| CDY66672 | Canola | nucleus | 25.89 | 11.94 |
| CDY30261 | Canola | nucleus | 26.4 | 11.82 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078JTQ9 | UniProt:A0A078JTQ9 | EnsemblPlants:CDY69021 | ProteinID:CDY69021 | ProteinID:CDY69021.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00082029001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF23 | UniParc:UPI0004EE331C | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g43680DBnaC01g43680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTQ9]
Coordinates
chrLK038461:-:868..1656
Molecular Weight (calculated)
21561.3 Da
IEP (calculated)
9.610
GRAVY (calculated)
-0.977
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDPAAYYQS MMAKPQQQQQ PQFPVQEQLN CPRCDSQNTK FCYYNNYNLS QPLHFCKSCR RYWTKGGALR NVPVGGGTRK NAKRSTTSPT SPSNNKKTKN
101: TDPDPNSQSA HKPDTEPTRM LYGFPIGDQD VKGMEMSGGG SFSSLLASNM QLGLGGIVLD GSGWDPGMGL RRSEAGNGRG GGGNPWTDLA MNRVEKN
101: TDPDPNSQSA HKPDTEPTRM LYGFPIGDQD VKGMEMSGGG SFSSLLASNM QLGLGGIVLD GSGWDPGMGL RRSEAGNGRG GGGNPWTDLA MNRVEKN
001: MQDPAAYYQT MMAKQQQQQQ PQFAEQEQLK CPRCDSPNTK FCYYNNYNLS QPRHFCKSCR RYWTKGGALR NVPVGGGSRK NATKRSTSSS SSASSPSNSS
101: QNKKTKNPDP DPDPRNSQKP DLDPTRMLYG FPIGDQDVKG MEIGGSFSSL LANNMQLGLG GGGIMLDGSG WDHPGMGLGL RRTEPGNNNN NPWTDLAMNR
201: AEKN
101: QNKKTKNPDP DPDPRNSQKP DLDPTRMLYG FPIGDQDVKG MEIGGSFSSL LANNMQLGLG GGGIMLDGSG WDHPGMGLGL RRTEPGNNNN NPWTDLAMNR
201: AEKN
Arabidopsis Description
DOF3.1DOF2 [Source:UniProtKB/TrEMBL;Acc:A0A178VA07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.