Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48879 | Canola | nucleus | 98.06 | 98.06 |
| CDY37299 | Canola | nucleus | 86.41 | 89.0 |
| CDY51457 | Canola | nucleus | 82.04 | 88.48 |
| CDY69021 | Canola | nucleus | 84.47 | 88.32 |
| CDY56923 | Canola | nucleus | 79.13 | 87.63 |
| AT3G21270.1 | Thale cress | nucleus | 81.55 | 82.35 |
| CDY43923 | Canola | nucleus | 47.09 | 60.25 |
| CDY46544 | Canola | nucleus | 58.25 | 60.0 |
| CDY52953 | Canola | nucleus | 55.34 | 58.76 |
| CDX87836 | Canola | nucleus | 51.46 | 58.24 |
| KRH47156 | Soybean | nucleus | 50.49 | 49.29 |
| KRH09992 | Soybean | nucleus | 50.0 | 48.82 |
| GSMUA_Achr7P09590_001 | Banana | nucleus | 45.63 | 47.96 |
| KRH23341 | Soybean | nucleus | 48.54 | 47.17 |
| KRH44186 | Soybean | nucleus | 48.06 | 46.48 |
| VIT_09s0002g02490.t01 | Wine grape | nucleus | 46.12 | 43.98 |
| GSMUA_Achr10P... | Banana | nucleus | 45.63 | 41.23 |
| GSMUA_Achr2P15700_001 | Banana | nucleus | 42.72 | 39.29 |
| GSMUA_Achr4P30860_001 | Banana | nucleus | 40.29 | 35.47 |
| CDY71347 | Canola | nucleus | 22.33 | 34.85 |
| CDY52832 | Canola | nucleus | 33.5 | 31.08 |
| CDY20892 | Canola | nucleus | 31.07 | 31.07 |
| CDY58082 | Canola | nucleus | 30.58 | 30.58 |
| CDY17783 | Canola | nucleus | 32.52 | 29.26 |
| CDY54696 | Canola | nucleus | 33.5 | 28.99 |
| CDX83127 | Canola | nucleus | 33.01 | 28.94 |
| CDY02086 | Canola | nucleus | 33.5 | 28.51 |
| CDY18628 | Canola | nucleus | 29.13 | 28.3 |
| CDY37670 | Canola | nucleus | 22.82 | 27.98 |
| CDY23010 | Canola | nucleus | 33.5 | 27.94 |
| CDY12790 | Canola | nucleus | 29.61 | 27.85 |
| CDY01450 | Canola | nucleus | 29.61 | 27.73 |
| CDY67393 | Canola | nucleus | 22.82 | 27.65 |
| CDY17009 | Canola | nucleus | 30.58 | 27.39 |
| CDX81350 | Canola | nucleus | 29.61 | 27.23 |
| CDX99791 | Canola | nucleus | 22.82 | 27.17 |
| CDY15647 | Canola | nucleus | 23.3 | 27.12 |
| CDY50789 | Canola | nucleus | 22.82 | 26.86 |
| CDX90171 | Canola | nucleus | 22.33 | 26.44 |
| CDY43321 | Canola | nucleus | 22.33 | 26.44 |
| CDX75689 | Canola | nucleus, plastid | 28.64 | 24.38 |
| CDX69349 | Canola | nucleus, plastid | 28.64 | 24.38 |
| CDY00286 | Canola | nucleus | 24.27 | 18.32 |
| CDY69084 | Canola | nucleus | 24.27 | 18.25 |
| CDY69244 | Canola | nucleus | 24.76 | 17.47 |
| CDY67518 | Canola | nucleus | 24.76 | 17.47 |
| CDY44994 | Canola | nucleus | 22.82 | 17.41 |
| CDY50734 | Canola | nucleus | 19.9 | 15.13 |
| CDY46443 | Canola | nucleus | 24.27 | 14.93 |
| CDY16193 | Canola | nucleus | 23.3 | 14.68 |
| CDY72477 | Canola | nucleus | 26.21 | 14.67 |
| CDX95919 | Canola | nucleus | 26.21 | 14.67 |
| CDY50735 | Canola | extracellular | 25.73 | 14.56 |
| CDY01768 | Canola | nucleus | 25.73 | 14.4 |
| CDY37010 | Canola | nucleus | 27.18 | 14.36 |
| CDY07344 | Canola | nucleus | 25.73 | 13.73 |
| CDY67869 | Canola | nucleus | 25.24 | 13.51 |
| CDX67434 | Canola | nucleus | 26.7 | 13.0 |
| CDX74440 | Canola | nucleus | 26.7 | 12.97 |
| CDY47405 | Canola | nucleus | 26.21 | 12.59 |
| CDY30261 | Canola | nucleus | 26.7 | 12.5 |
| CDY66672 | Canola | nucleus | 25.73 | 12.41 |
Protein Annotations
| MapMan:15.5.1.5 | GO:A0A078H140 | UniProt:A0A078H140 | EnsemblPlants:CDY32420 | ProteinID:CDY32420 | ProteinID:CDY32420.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00052020001 | InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 |
| ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF23 | UniParc:UPI0004EEF49C | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g42040DBnaC03g42040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H140]
Coordinates
chrLK032294:+:278750..279370
Molecular Weight (calculated)
22436.3 Da
IEP (calculated)
9.184
GRAVY (calculated)
-1.002
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDPAAYYQS MMAKQLHQQQ QQQQPQFPDQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC KSCRRYWTKG GALRNVPVGG GSRKNAKRST SSSTSPSNSH
101: KKAKTPDPDP DSQKETNPDT DPTRMLYGFP IGDQDVKGME MGGGGGGSFS SLLASNMQLG LGGIMLDGSG WDPGMGLGMG LRRSEAGNGG GGSPWTDLAM
201: NRVEKN
101: KKAKTPDPDP DSQKETNPDT DPTRMLYGFP IGDQDVKGME MGGGGGGSFS SLLASNMQLG LGGIMLDGSG WDPGMGLGMG LRRSEAGNGG GGSPWTDLAM
201: NRVEKN
001: MQDPAAYYQT MMAKQQQQQQ PQFAEQEQLK CPRCDSPNTK FCYYNNYNLS QPRHFCKSCR RYWTKGGALR NVPVGGGSRK NATKRSTSSS SSASSPSNSS
101: QNKKTKNPDP DPDPRNSQKP DLDPTRMLYG FPIGDQDVKG MEIGGSFSSL LANNMQLGLG GGGIMLDGSG WDHPGMGLGL RRTEPGNNNN NPWTDLAMNR
201: AEKN
101: QNKKTKNPDP DPDPRNSQKP DLDPTRMLYG FPIGDQDVKG MEIGGSFSSL LANNMQLGLG GGGIMLDGSG WDHPGMGLGL RRTEPGNNNN NPWTDLAMNR
201: AEKN
Arabidopsis Description
DOF3.1DOF2 [Source:UniProtKB/TrEMBL;Acc:A0A178VA07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.