Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83127 | Canola | nucleus | 73.12 | 78.72 |
| Bra030010.1-P | Field mustard | nucleus | 73.12 | 78.72 |
| CDY54696 | Canola | nucleus | 73.91 | 78.57 |
| CDY17783 | Canola | nucleus | 70.36 | 77.73 |
| CDY02086 | Canola | nucleus | 74.31 | 77.69 |
| Bra012901.1-P | Field mustard | nucleus | 74.31 | 77.69 |
| Bra036082.1-P | Field mustard | nucleus | 66.8 | 76.13 |
| CDY52832 | Canola | nucleus | 66.01 | 75.23 |
| CDY23010 | Canola | nucleus | 71.15 | 72.87 |
| AT5G66940.1 | Thale cress | nucleus | 52.57 | 59.11 |
| KRH70017 | Soybean | nucleus | 50.59 | 54.7 |
| KRH08373 | Soybean | nucleus | 49.41 | 52.97 |
| AT1G47655.1 | Thale cress | nucleus | 34.39 | 41.63 |
| AT1G51700.1 | Thale cress | nucleus | 28.06 | 36.6 |
| AT3G21270.1 | Thale cress | nucleus | 28.46 | 35.29 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 30.04 | 33.04 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 29.64 | 32.61 |
| KXG31638 | Sorghum | nucleus | 30.04 | 32.34 |
| Zm00001d039482_P001 | Maize | nucleus | 29.25 | 32.03 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 29.25 | 31.09 |
| AT1G29160.1 | Thale cress | nucleus | 20.16 | 29.14 |
| AT2G34140.1 | Thale cress | nucleus | 19.37 | 28.82 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 24.11 | 24.8 |
| AT5G62430.1 | Thale cress | nucleus | 21.74 | 18.46 |
| AT1G69570.1 | Thale cress | nucleus | 25.3 | 16.04 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 22.13 | 15.05 |
| AT3G47500.1 | Thale cress | nucleus | 24.9 | 14.06 |
| AT5G39660.1 | Thale cress | nucleus | 23.72 | 13.13 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:824205 | UniProt:A0A178VFT5 | ProteinID:AEE78664.1 | ArrayExpress:AT3G50410 | EnsemblPlantsGene:AT3G50410 |
| RefSeq:AT3G50410 | TAIR:AT3G50410 | RefSeq:AT3G50410-TAIR-G | EnsemblPlants:AT3G50410.1 | TAIR:AT3G50410.1 | ProteinID:CAB88324.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009733 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042545 | GO:GO:0044212 |
| GO:GO:0045787 | GO:GO:0045893 | GO:GO:0046872 | InterPro:IPR003851 | RefSeq:NP_190610.1 | ProteinID:OAP05220.1 |
| Symbol:OBP1 | PFAM:PD007478 | PFAM:PF02701 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005660 | PO:PO:0006339 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020041 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0020147 | PO:PO:0020148 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF12 | UniProt:Q39088 |
| UniParc:UPI0000052A1D | EMBL:X89192 | InterPro:Znf_Dof | SEG:seg | : | : |
Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
Coordinates
chr3:+:18709613..18710836
Molecular Weight (calculated)
26383.6 Da
IEP (calculated)
8.494
GRAVY (calculated)
-0.328
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.