Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16193 | Canola | nucleus | 62.37 | 70.95 |
| Bra024683.1-P | Field mustard | nucleus | 62.37 | 70.95 |
| CDY50735 | Canola | extracellular | 65.32 | 66.76 |
| CDY44994 | Canola | nucleus | 48.39 | 66.67 |
| Bra016286.1-P | Field mustard | nucleus | 57.8 | 64.18 |
| CDY46443 | Canola | nucleus | 57.26 | 63.58 |
| CDY50734 | Canola | nucleus | 38.44 | 52.77 |
| AT1G69570.1 | Thale cress | nucleus | 56.45 | 52.63 |
| AT1G29160.1 | Thale cress | nucleus | 17.74 | 37.71 |
| AT5G62430.1 | Thale cress | nucleus | 30.11 | 37.58 |
| AT2G34140.1 | Thale cress | nucleus | 16.67 | 36.47 |
| GSMUA_Achr5P07660_001 | Banana | nucleus | 27.69 | 34.11 |
| GSMUA_Achr9P05020_001 | Banana | nucleus | 28.49 | 32.32 |
| KRH74885 | Soybean | nucleus | 35.48 | 27.56 |
| AT3G47500.1 | Thale cress | nucleus | 32.8 | 27.23 |
| KRH50577 | Soybean | nucleus | 34.68 | 26.93 |
| KRH70746 | Soybean | nucleus, plastid | 34.68 | 26.6 |
| GSMUA_Achr6P32240_001 | Banana | nucleus | 27.69 | 26.48 |
| KRG89621 | Soybean | nucleus | 33.33 | 25.73 |
| GSMUA_Achr11P... | Banana | nucleus | 28.76 | 25.42 |
| AT5G39660.1 | Thale cress | nucleus | 30.91 | 25.16 |
| AT3G21270.1 | Thale cress | nucleus | 13.17 | 24.02 |
| AT1G51700.1 | Thale cress | nucleus | 12.37 | 23.71 |
| AT1G47655.1 | Thale cress | nucleus | 13.17 | 23.45 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 15.05 | 22.76 |
| AT5G66940.1 | Thale cress | nucleus | 13.71 | 22.67 |
| AT3G50410.1 | Thale cress | nucleus | 15.05 | 22.13 |
| GSMUA_Achr2P11520_001 | Banana | nucleus | 26.34 | 21.08 |
| TraesCS3A01G180600.1 | Wheat | nucleus | 30.11 | 20.78 |
| TraesCS3B01G210300.1 | Wheat | nucleus | 30.11 | 20.78 |
| TraesCS3D01G185500.2 | Wheat | nucleus | 29.84 | 20.63 |
| EES02731 | Sorghum | nucleus | 30.11 | 20.0 |
| Zm00001d040362_P001 | Maize | nucleus | 30.11 | 19.58 |
| Os01t0264000-01 | Rice | nucleus | 25.54 | 19.15 |
Protein Annotations
| MapMan:15.5.1.5 | ArrayExpress:AT1G26790 | EnsemblPlantsGene:AT1G26790 | RefSeq:AT1G26790 | TAIR:AT1G26790 | RefSeq:AT1G26790-TAIR-G |
| EnsemblPlants:AT1G26790.1 | TAIR:AT1G26790.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 |
| InterPro:IPR003851 | PFAM:PD007478 | PFAM:PF02701 | PO:PO:0009047 | ScanProsite:PS01361 | PFscan:PS50884 |
| PANTHER:PTHR31089 | PANTHER:PTHR31089:SF14 | UniParc:UPI00084850A8 | InterPro:Znf_Dof | SEG:seg | : |
Description
Dof-type zinc finger DNA-binding family protein [Source:TAIR;Acc:AT1G26790]
Coordinates
chr1:-:9273684..9275193
Molecular Weight (calculated)
42007.5 Da
IEP (calculated)
7.274
GRAVY (calculated)
-0.850
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKIGMSQV RDTPVKLFGW TITPVSHDPY SSSSHVLPDS SSSSSSSSLS LRPHMMNNQS VTDNTSLKLS SNLNNESKET SENSDDQHSE ITTITSEEEK
101: TTELKKPDKI LPCPRCNSAD TKFCYYNNYN VNQPRHFCRK CQRYWTAGGS MRIVPVGSGR RKNKGWVSSD QYLHITSEDT DNYNSSSTKI LSFESSDSLV
201: TERPKHQSNE VKINAEPVSQ EPNNFQGLLP PQASPVSPPW PYQYPPNPSF YHMPVYWGCA IPVWSTLDTS TCLGKRTRDE TSHETVKESK NAFERTSLLL
301: ESQSIKNETS MATNNHVWYP VPMTREKTQE FSFFSNGAET KSSNNRFVPE TYLNLQANPA AMARSMNFRE SI
101: TTELKKPDKI LPCPRCNSAD TKFCYYNNYN VNQPRHFCRK CQRYWTAGGS MRIVPVGSGR RKNKGWVSSD QYLHITSEDT DNYNSSSTKI LSFESSDSLV
201: TERPKHQSNE VKINAEPVSQ EPNNFQGLLP PQASPVSPPW PYQYPPNPSF YHMPVYWGCA IPVWSTLDTS TCLGKRTRDE TSHETVKESK NAFERTSLLL
301: ESQSIKNETS MATNNHVWYP VPMTREKTQE FSFFSNGAET KSSNNRFVPE TYLNLQANPA AMARSMNFRE SI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.