Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20892 | Canola | nucleus | 78.47 | 79.61 |
| CDY58082 | Canola | nucleus | 77.51 | 78.64 |
| Bra015609.1-P | Field mustard | nucleus | 79.43 | 74.44 |
| CDY17009 | Canola | nucleus | 73.21 | 66.52 |
| VIT_18s0001g11310.t01 | Wine grape | nucleus | 44.98 | 41.59 |
| AT3G50410.1 | Thale cress | nucleus | 41.63 | 34.39 |
| Solyc04g079570.1.1 | Tomato | nucleus | 38.76 | 33.89 |
| AT5G66940.1 | Thale cress | nucleus | 36.36 | 33.78 |
| AT3G21270.1 | Thale cress | nucleus | 30.62 | 31.37 |
| PGSC0003DMT400030496 | Potato | nucleus | 28.71 | 30.61 |
| AT1G51700.1 | Thale cress | nucleus | 28.23 | 30.41 |
| KXG31638 | Sorghum | nucleus | 31.58 | 28.09 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 30.62 | 27.83 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 30.62 | 27.83 |
| Zm00001d039482_P001 | Maize | nucleus | 30.62 | 27.71 |
| AT1G29160.1 | Thale cress | nucleus | 22.01 | 26.29 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 29.67 | 26.05 |
| AT2G34140.1 | Thale cress | nucleus | 20.1 | 24.71 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 25.36 | 21.54 |
| AT5G62430.1 | Thale cress | nucleus | 24.88 | 17.45 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 23.45 | 13.17 |
| AT5G39660.1 | Thale cress | nucleus | 26.32 | 12.04 |
| AT1G69570.1 | Thale cress | nucleus | 22.97 | 12.03 |
| AT3G47500.1 | Thale cress | nucleus | 24.88 | 11.61 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:841175 | ProteinID:AAD46020.1 | EMBL:AB493502 | ProteinID:AEE32197.1 | ArrayExpress:AT1G47655 |
| EnsemblPlantsGene:AT1G47655 | RefSeq:AT1G47655 | TAIR:AT1G47655 | RefSeq:AT1G47655-TAIR-G | EnsemblPlants:AT1G47655.1 | TAIR:AT1G47655.1 |
| Unigene:At.38579 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 |
| InterPro:IPR003851 | RefSeq:NP_564510.1 | PFAM:PD007478 | PFAM:PF02701 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025022 | ScanProsite:PS01361 |
| PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF77 | UniProt:Q9SX97 | UniParc:UPI000009D1D1 | InterPro:Znf_Dof |
| SEG:seg | : | : | : | : | : |
Description
DOF1.6Dof zinc finger protein DOF1.6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX97]
Coordinates
chr1:+:17525342..17526308
Molecular Weight (calculated)
22293.8 Da
IEP (calculated)
7.203
GRAVY (calculated)
-0.563
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSEPNQTRP TRVQPSTAAY PPPNLAEPLP CPRCNSTTTK FCYYNNYNLA QPRYYCKSCR RYWTQGGTLR DVPVGGGTRR SSSKRHRSFS TTATSSSSSS
101: SVITTTTQEP ATTEASQTKV TNLISGHGSF ASLLGLGSGN GGLDYGFGYG YGLEEMSIGY LGDSSVGEIP VVDGCGGDTW QIGEIEGKSG GDSLIWPGLE
201: ISMQTNDVK
101: SVITTTTQEP ATTEASQTKV TNLISGHGSF ASLLGLGSGN GGLDYGFGYG YGLEEMSIGY LGDSSVGEIP VVDGCGGDTW QIGEIEGKSG GDSLIWPGLE
201: ISMQTNDVK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.